Experiment: KB with Piperacillin 0.775 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0451 and Psyr_0452 are separated by 122 nucleotides Psyr_0452 and Psyr_0453 are separated by 106 nucleotides Psyr_0453 and Psyr_0454 are separated by 131 nucleotides
Psyr_0451: Psyr_0451 - regulatory protein, LysR:LysR, substrate-binding protein, at 486,927 to 487,853
_0451
Psyr_0452: Psyr_0452 - HylII, at 487,976 to 488,590
_0452
Psyr_0453: Psyr_0453 - 16S rRNA m(3)U-1498 methyltransferase, at 488,697 to 489,416
_0453
Psyr_0454: Psyr_0454 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme, at 489,548 to 490,954
_0454
Position (kb) 487
488
489 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 487.087 kb on + strand, within Psyr_0451 at 487.210 kb on - strand, within Psyr_0451 at 487.435 kb on + strand, within Psyr_0451 at 487.435 kb on + strand, within Psyr_0451 at 487.435 kb on + strand, within Psyr_0451 at 487.435 kb on + strand, within Psyr_0451 at 487.435 kb on + strand, within Psyr_0451 at 487.436 kb on - strand, within Psyr_0451 at 487.436 kb on - strand, within Psyr_0451 at 487.436 kb on - strand, within Psyr_0451 at 487.436 kb on - strand, within Psyr_0451 at 487.436 kb on - strand, within Psyr_0451 at 487.472 kb on + strand, within Psyr_0451 at 487.541 kb on - strand, within Psyr_0451 at 487.651 kb on + strand, within Psyr_0451 at 487.651 kb on + strand, within Psyr_0451 at 487.651 kb on + strand, within Psyr_0451 at 487.651 kb on + strand, within Psyr_0451 at 487.652 kb on - strand, within Psyr_0451 at 487.652 kb on - strand, within Psyr_0451 at 487.813 kb on - strand at 487.894 kb on + strand at 487.904 kb on + strand at 487.904 kb on + strand at 487.904 kb on + strand at 487.904 kb on + strand at 487.904 kb on + strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.947 kb on + strand at 487.979 kb on + strand at 487.979 kb on + strand at 487.979 kb on + strand at 487.979 kb on + strand at 487.979 kb on + strand at 487.980 kb on - strand at 487.980 kb on - strand at 487.980 kb on - strand at 487.980 kb on - strand at 487.980 kb on - strand at 487.983 kb on - strand at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.132 kb on + strand, within Psyr_0452 at 488.133 kb on - strand, within Psyr_0452 at 488.150 kb on + strand, within Psyr_0452 at 488.151 kb on - strand, within Psyr_0452 at 488.210 kb on + strand, within Psyr_0452 at 488.210 kb on + strand, within Psyr_0452 at 488.211 kb on - strand, within Psyr_0452 at 488.211 kb on - strand, within Psyr_0452 at 488.232 kb on - strand, within Psyr_0452 at 488.232 kb on - strand, within Psyr_0452 at 488.328 kb on + strand, within Psyr_0452 at 488.328 kb on + strand, within Psyr_0452 at 488.328 kb on + strand, within Psyr_0452 at 488.329 kb on - strand, within Psyr_0452 at 488.469 kb on - strand, within Psyr_0452 at 488.469 kb on - strand, within Psyr_0452 at 488.469 kb on - strand, within Psyr_0452 at 488.579 kb on + strand at 488.579 kb on + strand at 488.580 kb on - strand at 488.622 kb on + strand at 488.622 kb on + strand at 488.622 kb on + strand at 488.622 kb on + strand at 488.622 kb on + strand at 488.623 kb on - strand at 488.623 kb on - strand at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.341 kb on - strand, within Psyr_0453 at 489.341 kb on - strand, within Psyr_0453 at 489.341 kb on - strand, within Psyr_0453
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Piperacillin 0.775 ug/ml remove 487,087 + Psyr_0451 0.17 +0.4 487,210 - Psyr_0451 0.31 -0.4 487,435 + Psyr_0451 0.55 +0.2 487,435 + Psyr_0451 0.55 -1.0 487,435 + Psyr_0451 0.55 -0.1 487,435 + Psyr_0451 0.55 +0.4 487,435 + Psyr_0451 0.55 -1.2 487,436 - Psyr_0451 0.55 -1.1 487,436 - Psyr_0451 0.55 -0.4 487,436 - Psyr_0451 0.55 +0.4 487,436 - Psyr_0451 0.55 +0.9 487,436 - Psyr_0451 0.55 -0.4 487,472 + Psyr_0451 0.59 +1.0 487,541 - Psyr_0451 0.66 +0.1 487,651 + Psyr_0451 0.78 -1.1 487,651 + Psyr_0451 0.78 -0.8 487,651 + Psyr_0451 0.78 +0.6 487,651 + Psyr_0451 0.78 +0.0 487,652 - Psyr_0451 0.78 +0.2 487,652 - Psyr_0451 0.78 +1.3 487,813 - -0.8 487,894 + +0.6 487,904 + -0.6 487,904 + +0.0 487,904 + -0.6 487,904 + -1.0 487,904 + -0.4 487,905 - -0.1 487,905 - +0.4 487,905 - +1.2 487,905 - -0.4 487,905 - -0.6 487,905 - -0.9 487,905 - -0.7 487,905 - -0.7 487,905 - +0.7 487,905 - -0.1 487,905 - -0.6 487,947 + -1.2 487,979 + +0.4 487,979 + +1.0 487,979 + -0.2 487,979 + -0.5 487,979 + -0.0 487,980 - +0.9 487,980 - -0.0 487,980 - +0.6 487,980 - +0.4 487,980 - -0.2 487,983 - +0.2 488,108 + Psyr_0452 0.21 +0.2 488,108 + Psyr_0452 0.21 +0.6 488,108 + Psyr_0452 0.21 -0.4 488,108 + Psyr_0452 0.21 -0.7 488,108 + Psyr_0452 0.21 -0.6 488,108 + Psyr_0452 0.21 -0.6 488,108 + Psyr_0452 0.21 -0.0 488,108 + Psyr_0452 0.21 -0.4 488,108 + Psyr_0452 0.21 -1.7 488,108 + Psyr_0452 0.21 +0.2 488,108 + Psyr_0452 0.21 +0.3 488,108 + Psyr_0452 0.21 -0.4 488,108 + Psyr_0452 0.21 +0.0 488,108 + Psyr_0452 0.21 -0.4 488,108 + Psyr_0452 0.21 +0.1 488,109 - Psyr_0452 0.22 +0.2 488,109 - Psyr_0452 0.22 -0.6 488,109 - Psyr_0452 0.22 +2.5 488,109 - Psyr_0452 0.22 -0.7 488,109 - Psyr_0452 0.22 +0.2 488,109 - Psyr_0452 0.22 -0.5 488,109 - Psyr_0452 0.22 -0.4 488,109 - Psyr_0452 0.22 +0.2 488,109 - Psyr_0452 0.22 +0.8 488,109 - Psyr_0452 0.22 +0.3 488,109 - Psyr_0452 0.22 +0.6 488,109 - Psyr_0452 0.22 +0.6 488,109 - Psyr_0452 0.22 +0.9 488,132 + Psyr_0452 0.25 +1.9 488,133 - Psyr_0452 0.26 -0.4 488,150 + Psyr_0452 0.28 -0.6 488,151 - Psyr_0452 0.28 -0.4 488,210 + Psyr_0452 0.38 +0.5 488,210 + Psyr_0452 0.38 +0.4 488,211 - Psyr_0452 0.38 +0.4 488,211 - Psyr_0452 0.38 -1.0 488,232 - Psyr_0452 0.42 +3.8 488,232 - Psyr_0452 0.42 +0.0 488,328 + Psyr_0452 0.57 +0.2 488,328 + Psyr_0452 0.57 +1.3 488,328 + Psyr_0452 0.57 +0.4 488,329 - Psyr_0452 0.57 -0.0 488,469 - Psyr_0452 0.80 +0.1 488,469 - Psyr_0452 0.80 +0.0 488,469 - Psyr_0452 0.80 -0.2 488,579 + +0.6 488,579 + +1.2 488,580 - +0.8 488,622 + -1.3 488,622 + +1.0 488,622 + +0.6 488,622 + +0.8 488,622 + -1.0 488,623 - -1.1 488,623 - +0.2 489,340 + Psyr_0453 0.89 -1.8 489,340 + Psyr_0453 0.89 +0.0 489,340 + Psyr_0453 0.89 -1.1 489,340 + Psyr_0453 0.89 +0.2 489,340 + Psyr_0453 0.89 +0.9 489,340 + Psyr_0453 0.89 -0.3 489,340 + Psyr_0453 0.89 -0.0 489,340 + Psyr_0453 0.89 +0.5 489,340 + Psyr_0453 0.89 +0.6 489,341 - Psyr_0453 0.89 +0.1 489,341 - Psyr_0453 0.89 +0.8 489,341 - Psyr_0453 0.89 +1.0
Or see this region's nucleotide sequence