Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4983

Experiment: Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4982 and PfGW456L13_4983 are separated by 179 nucleotidesPfGW456L13_4983 and PfGW456L13_4984 are separated by 314 nucleotides PfGW456L13_4982 - Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19), at 5,560,009 to 5,561,259 _4982 PfGW456L13_4983 - Thioredoxin reductase (EC 1.8.1.9), at 5,561,439 to 5,562,395 _4983 PfGW456L13_4984 - Sulfate transporter, CysZ-type, at 5,562,710 to 5,563,462 _4984 Position (kb) 5561 5562 5563Strain fitness (log2 ratio) -1 0 1at 5560.445 kb on - strand, within PfGW456L13_4982at 5560.590 kb on + strand, within PfGW456L13_4982at 5560.873 kb on + strand, within PfGW456L13_4982at 5560.873 kb on + strand, within PfGW456L13_4982at 5560.873 kb on + strand, within PfGW456L13_4982at 5560.873 kb on + strand, within PfGW456L13_4982at 5560.874 kb on - strand, within PfGW456L13_4982at 5560.874 kb on - strand, within PfGW456L13_4982at 5560.874 kb on - strand, within PfGW456L13_4982at 5560.874 kb on - strand, within PfGW456L13_4982at 5561.017 kb on + strand, within PfGW456L13_4982at 5561.018 kb on - strand, within PfGW456L13_4982at 5561.056 kb on - strand, within PfGW456L13_4982at 5561.226 kb on + strandat 5561.276 kb on + strandat 5561.277 kb on - strandat 5561.370 kb on + strandat 5561.384 kb on + strandat 5561.384 kb on + strandat 5561.385 kb on - strandat 5561.385 kb on - strandat 5561.385 kb on - strandat 5561.385 kb on - strandat 5561.432 kb on + strandat 5562.562 kb on - strandat 5562.576 kb on + strandat 5562.576 kb on + strandat 5562.576 kb on + strandat 5562.576 kb on + strandat 5562.576 kb on + strandat 5562.576 kb on + strandat 5562.577 kb on - strandat 5562.577 kb on - strandat 5562.577 kb on - strandat 5562.577 kb on - strandat 5562.587 kb on + strandat 5562.587 kb on + strandat 5562.587 kb on + strandat 5562.621 kb on + strandat 5562.621 kb on + strandat 5562.621 kb on + strandat 5562.621 kb on + strandat 5562.622 kb on - strandat 5562.673 kb on + strandat 5562.709 kb on + strandat 5562.709 kb on + strandat 5562.709 kb on + strandat 5562.710 kb on - strandat 5562.710 kb on - strandat 5562.710 kb on - strandat 5562.710 kb on - strandat 5562.710 kb on - strandat 5562.710 kb on - strandat 5562.740 kb on + strandat 5562.740 kb on + strandat 5562.741 kb on - strandat 5562.839 kb on + strand, within PfGW456L13_4984at 5562.840 kb on - strand, within PfGW456L13_4984at 5562.840 kb on - strand, within PfGW456L13_4984at 5562.840 kb on - strand, within PfGW456L13_4984at 5562.840 kb on - strand, within PfGW456L13_4984at 5562.917 kb on + strand, within PfGW456L13_4984at 5562.917 kb on + strand, within PfGW456L13_4984at 5562.917 kb on + strand, within PfGW456L13_4984at 5562.917 kb on + strand, within PfGW456L13_4984at 5562.917 kb on + strand, within PfGW456L13_4984at 5562.917 kb on + strand, within PfGW456L13_4984at 5562.918 kb on - strand, within PfGW456L13_4984at 5562.918 kb on - strand, within PfGW456L13_4984at 5563.134 kb on - strand, within PfGW456L13_4984at 5563.244 kb on + strand, within PfGW456L13_4984at 5563.244 kb on + strand, within PfGW456L13_4984at 5563.244 kb on + strand, within PfGW456L13_4984at 5563.254 kb on - strand, within PfGW456L13_4984at 5563.346 kb on + strand, within PfGW456L13_4984at 5563.346 kb on + strand, within PfGW456L13_4984

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.004 mg/ml
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5,560,445 - PfGW456L13_4982 0.35 +0.4
5,560,590 + PfGW456L13_4982 0.46 -0.0
5,560,873 + PfGW456L13_4982 0.69 +0.3
5,560,873 + PfGW456L13_4982 0.69 -1.5
5,560,873 + PfGW456L13_4982 0.69 +0.3
5,560,873 + PfGW456L13_4982 0.69 +0.3
5,560,874 - PfGW456L13_4982 0.69 +0.8
5,560,874 - PfGW456L13_4982 0.69 -0.2
5,560,874 - PfGW456L13_4982 0.69 -0.7
5,560,874 - PfGW456L13_4982 0.69 +0.8
5,561,017 + PfGW456L13_4982 0.81 -0.1
5,561,018 - PfGW456L13_4982 0.81 +0.4
5,561,056 - PfGW456L13_4982 0.84 -0.1
5,561,226 + -0.7
5,561,276 + +0.8
5,561,277 - -0.2
5,561,370 + +0.3
5,561,384 + +0.8
5,561,384 + +0.2
5,561,385 - +0.8
5,561,385 - +0.4
5,561,385 - -1.7
5,561,385 - -1.2
5,561,432 + -0.1
5,562,562 - +1.2
5,562,576 + -0.2
5,562,576 + +0.3
5,562,576 + +1.4
5,562,576 + -0.1
5,562,576 + +0.4
5,562,576 + +0.0
5,562,577 - +0.1
5,562,577 - -0.9
5,562,577 - -0.9
5,562,577 - -0.7
5,562,587 + +0.1
5,562,587 + +0.2
5,562,587 + +1.2
5,562,621 + -0.3
5,562,621 + -0.1
5,562,621 + +0.9
5,562,621 + +0.1
5,562,622 - -0.8
5,562,673 + +0.3
5,562,709 + +0.6
5,562,709 + +0.6
5,562,709 + +0.2
5,562,710 - -0.1
5,562,710 - +0.7
5,562,710 - -0.2
5,562,710 - +0.6
5,562,710 - -0.5
5,562,710 - +0.1
5,562,740 + -0.1
5,562,740 + -1.0
5,562,741 - -0.5
5,562,839 + PfGW456L13_4984 0.17 -1.4
5,562,840 - PfGW456L13_4984 0.17 +0.8
5,562,840 - PfGW456L13_4984 0.17 -0.4
5,562,840 - PfGW456L13_4984 0.17 -0.1
5,562,840 - PfGW456L13_4984 0.17 -0.2
5,562,917 + PfGW456L13_4984 0.27 -0.8
5,562,917 + PfGW456L13_4984 0.27 -0.6
5,562,917 + PfGW456L13_4984 0.27 -0.4
5,562,917 + PfGW456L13_4984 0.27 -0.5
5,562,917 + PfGW456L13_4984 0.27 -0.9
5,562,917 + PfGW456L13_4984 0.27 -1.2
5,562,918 - PfGW456L13_4984 0.28 -0.3
5,562,918 - PfGW456L13_4984 0.28 +0.0
5,563,134 - PfGW456L13_4984 0.56 -0.5
5,563,244 + PfGW456L13_4984 0.71 -0.4
5,563,244 + PfGW456L13_4984 0.71 +0.1
5,563,244 + PfGW456L13_4984 0.71 +0.0
5,563,254 - PfGW456L13_4984 0.72 -0.2
5,563,346 + PfGW456L13_4984 0.84 -1.7
5,563,346 + PfGW456L13_4984 0.84 -0.4

Or see this region's nucleotide sequence