Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4841

Experiment: Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4839 and PfGW456L13_4840 overlap by 8 nucleotidesPfGW456L13_4840 and PfGW456L13_4841 are separated by 247 nucleotidesPfGW456L13_4841 and PfGW456L13_4842 are separated by 5 nucleotides PfGW456L13_4839 - GTP-binding protein Era, at 5,406,743 to 5,407,645 _4839 PfGW456L13_4840 - Ribonuclease III (EC 3.1.26.3), at 5,407,638 to 5,408,264 _4840 PfGW456L13_4841 - Signal peptidase I (EC 3.4.21.89), at 5,408,512 to 5,409,366 _4841 PfGW456L13_4842 - Translation elongation factor LepA, at 5,409,372 to 5,411,171 _4842 Position (kb) 5408 5409 5410Strain fitness (log2 ratio) -1 0 1at 5408.400 kb on - strandat 5408.430 kb on - strandat 5408.514 kb on - strandat 5409.374 kb on - strandat 5409.374 kb on - strandat 5409.378 kb on - strandat 5409.378 kb on - strandat 5409.740 kb on - strand, within PfGW456L13_4842at 5409.770 kb on - strand, within PfGW456L13_4842at 5409.942 kb on - strand, within PfGW456L13_4842at 5409.942 kb on - strand, within PfGW456L13_4842at 5410.016 kb on - strand, within PfGW456L13_4842at 5410.187 kb on - strand, within PfGW456L13_4842

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.004 mg/ml
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5,408,400 - +1.3
5,408,430 - -0.1
5,408,514 - +0.4
5,409,374 - +0.6
5,409,374 - +1.5
5,409,378 - +0.9
5,409,378 - +0.1
5,409,740 - PfGW456L13_4842 0.20 +0.0
5,409,770 - PfGW456L13_4842 0.22 -0.7
5,409,942 - PfGW456L13_4842 0.32 +1.3
5,409,942 - PfGW456L13_4842 0.32 -0.7
5,410,016 - PfGW456L13_4842 0.36 +0.1
5,410,187 - PfGW456L13_4842 0.45 -0.1

Or see this region's nucleotide sequence