Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2898

Experiment: Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2895 and PfGW456L13_2896 are separated by 93 nucleotidesPfGW456L13_2896 and PfGW456L13_2897 are separated by 189 nucleotidesPfGW456L13_2897 and PfGW456L13_2898 are separated by 256 nucleotides PfGW456L13_2895 - SERINE PROTEASE (EC 3.4.21.-), at 3,234,456 to 3,235,322 _2895 PfGW456L13_2896 - hypothetical protein, at 3,235,416 to 3,235,718 _2896 PfGW456L13_2897 - hypothetical protein, at 3,235,908 to 3,236,021 _2897 PfGW456L13_2898 - Integral membrane protein TerC, at 3,236,278 to 3,237,219 _2898 Position (kb) 3236 3237 3238Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3235.300 kb on - strandat 3235.300 kb on - strandat 3235.347 kb on + strandat 3235.360 kb on + strandat 3235.360 kb on + strandat 3235.361 kb on - strandat 3235.361 kb on - strandat 3235.361 kb on - strandat 3235.398 kb on - strandat 3235.417 kb on + strandat 3235.418 kb on - strandat 3235.418 kb on - strandat 3235.418 kb on - strandat 3235.418 kb on - strandat 3235.442 kb on + strandat 3235.442 kb on + strandat 3235.443 kb on - strandat 3235.453 kb on + strand, within PfGW456L13_2896at 3235.454 kb on - strand, within PfGW456L13_2896at 3235.454 kb on - strand, within PfGW456L13_2896at 3235.491 kb on + strand, within PfGW456L13_2896at 3235.492 kb on - strand, within PfGW456L13_2896at 3235.686 kb on + strand, within PfGW456L13_2896at 3235.686 kb on + strand, within PfGW456L13_2896at 3235.686 kb on + strand, within PfGW456L13_2896at 3235.686 kb on + strand, within PfGW456L13_2896at 3235.687 kb on - strand, within PfGW456L13_2896at 3235.687 kb on - strand, within PfGW456L13_2896at 3235.687 kb on - strand, within PfGW456L13_2896at 3235.724 kb on + strandat 3235.725 kb on - strandat 3235.725 kb on - strandat 3235.725 kb on - strandat 3235.725 kb on - strandat 3235.725 kb on - strandat 3235.807 kb on + strandat 3235.807 kb on + strandat 3235.807 kb on + strandat 3235.807 kb on + strandat 3235.808 kb on - strandat 3235.813 kb on + strandat 3235.816 kb on - strandat 3235.816 kb on - strandat 3235.816 kb on - strandat 3235.904 kb on + strandat 3235.904 kb on + strandat 3235.904 kb on + strandat 3235.905 kb on - strandat 3235.909 kb on + strandat 3235.909 kb on + strandat 3235.909 kb on + strandat 3235.910 kb on - strandat 3235.910 kb on - strandat 3235.945 kb on - strand, within PfGW456L13_2897at 3235.945 kb on - strand, within PfGW456L13_2897at 3235.945 kb on - strand, within PfGW456L13_2897at 3236.009 kb on - strand, within PfGW456L13_2897at 3236.033 kb on + strandat 3236.045 kb on - strandat 3236.053 kb on + strandat 3236.053 kb on + strandat 3236.053 kb on + strandat 3236.053 kb on + strandat 3236.054 kb on - strandat 3236.054 kb on - strandat 3236.088 kb on + strandat 3236.088 kb on + strandat 3236.088 kb on + strandat 3236.089 kb on - strandat 3236.089 kb on - strandat 3236.143 kb on + strandat 3236.143 kb on + strandat 3236.143 kb on + strandat 3236.143 kb on + strandat 3236.144 kb on - strandat 3236.144 kb on - strandat 3236.144 kb on - strandat 3236.144 kb on - strandat 3236.165 kb on - strandat 3236.171 kb on + strandat 3236.171 kb on + strandat 3236.171 kb on + strandat 3236.172 kb on - strandat 3236.216 kb on + strandat 3236.216 kb on + strandat 3236.216 kb on + strandat 3236.216 kb on + strandat 3236.217 kb on - strandat 3236.217 kb on - strandat 3236.217 kb on - strandat 3236.217 kb on - strandat 3236.217 kb on - strandat 3236.218 kb on + strandat 3236.218 kb on + strandat 3236.219 kb on - strandat 3236.219 kb on - strandat 3236.219 kb on - strandat 3236.219 kb on - strandat 3236.219 kb on - strandat 3236.219 kb on - strandat 3236.245 kb on + strandat 3236.245 kb on + strandat 3236.245 kb on + strandat 3236.245 kb on + strandat 3236.246 kb on - strandat 3236.246 kb on - strandat 3236.246 kb on - strandat 3236.246 kb on - strandat 3236.437 kb on + strand, within PfGW456L13_2898at 3236.438 kb on - strand, within PfGW456L13_2898at 3236.475 kb on + strand, within PfGW456L13_2898at 3236.476 kb on - strand, within PfGW456L13_2898at 3236.476 kb on - strand, within PfGW456L13_2898at 3236.476 kb on - strand, within PfGW456L13_2898at 3236.476 kb on - strand, within PfGW456L13_2898at 3236.560 kb on + strand, within PfGW456L13_2898at 3236.602 kb on + strand, within PfGW456L13_2898at 3236.637 kb on + strand, within PfGW456L13_2898at 3236.686 kb on + strand, within PfGW456L13_2898at 3236.686 kb on + strandat 3236.686 kb on + strandat 3236.686 kb on + strand, within PfGW456L13_2898at 3236.686 kb on + strand, within PfGW456L13_2898at 3236.686 kb on + strand, within PfGW456L13_2898at 3236.686 kb on + strand, within PfGW456L13_2898at 3236.686 kb on + strand, within PfGW456L13_2898at 3236.687 kb on - strand, within PfGW456L13_2898at 3236.687 kb on - strand, within PfGW456L13_2898at 3236.687 kb on - strand, within PfGW456L13_2898at 3236.687 kb on - strand, within PfGW456L13_2898at 3236.687 kb on - strand, within PfGW456L13_2898at 3236.687 kb on - strand, within PfGW456L13_2898at 3237.014 kb on + strand, within PfGW456L13_2898at 3237.031 kb on + strand, within PfGW456L13_2898at 3237.032 kb on - strand, within PfGW456L13_2898at 3237.052 kb on + strand, within PfGW456L13_2898at 3237.052 kb on + strand, within PfGW456L13_2898at 3237.052 kb on + strand, within PfGW456L13_2898at 3237.052 kb on + strand, within PfGW456L13_2898at 3237.053 kb on - strandat 3237.053 kb on - strand, within PfGW456L13_2898at 3237.053 kb on - strand, within PfGW456L13_2898at 3237.053 kb on - strand, within PfGW456L13_2898at 3237.053 kb on - strand, within PfGW456L13_2898at 3237.068 kb on + strand, within PfGW456L13_2898at 3237.068 kb on + strand, within PfGW456L13_2898at 3237.068 kb on + strand, within PfGW456L13_2898at 3237.069 kb on - strand, within PfGW456L13_2898at 3237.168 kb on - strandat 3237.217 kb on + strandat 3237.217 kb on + strandat 3237.217 kb on + strandat 3237.218 kb on - strandat 3237.298 kb on + strandat 3237.299 kb on - strandat 3237.319 kb on + strandat 3237.319 kb on + strandat 3237.319 kb on + strandat 3237.320 kb on - strandat 3237.516 kb on - strandat 3237.580 kb on + strandat 3237.732 kb on + strandat 3237.732 kb on + strandat 3237.732 kb on + strandat 3237.732 kb on + strandat 3237.733 kb on - strandat 3237.733 kb on - strandat 3237.791 kb on + strandat 3237.791 kb on + strandat 3237.792 kb on - strandat 3237.792 kb on - strandat 3237.854 kb on + strandat 3237.928 kb on + strandat 3237.929 kb on - strandat 3237.949 kb on + strandat 3237.949 kb on + strandat 3237.950 kb on - strandat 3238.095 kb on - strandat 3238.095 kb on - strandat 3238.105 kb on + strandat 3238.177 kb on + strandat 3238.178 kb on - strandat 3238.178 kb on - strandat 3238.178 kb on - strandat 3238.195 kb on + strandat 3238.195 kb on + strandat 3238.195 kb on + strandat 3238.196 kb on - strandat 3238.196 kb on - strandat 3238.196 kb on - strandat 3238.196 kb on - strandat 3238.199 kb on + strandat 3238.199 kb on + strandat 3238.199 kb on + strandat 3238.199 kb on + strandat 3238.199 kb on + strandat 3238.199 kb on + strandat 3238.200 kb on - strandat 3238.200 kb on - strandat 3238.200 kb on - strandat 3238.200 kb on - strandat 3238.200 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.004 mg/ml
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3,235,300 - +0.8
3,235,300 - +0.8
3,235,347 + +0.1
3,235,360 + -0.3
3,235,360 + -0.6
3,235,361 - +0.6
3,235,361 - +0.1
3,235,361 - -0.4
3,235,398 - +0.2
3,235,417 + -0.5
3,235,418 - +0.5
3,235,418 - -0.2
3,235,418 - +0.5
3,235,418 - -0.8
3,235,442 + -1.1
3,235,442 + +0.5
3,235,443 - -0.4
3,235,453 + PfGW456L13_2896 0.12 -1.1
3,235,454 - PfGW456L13_2896 0.13 +1.7
3,235,454 - PfGW456L13_2896 0.13 -2.0
3,235,491 + PfGW456L13_2896 0.25 -0.5
3,235,492 - PfGW456L13_2896 0.25 -0.2
3,235,686 + PfGW456L13_2896 0.89 -0.6
3,235,686 + PfGW456L13_2896 0.89 -0.7
3,235,686 + PfGW456L13_2896 0.89 +0.6
3,235,686 + PfGW456L13_2896 0.89 +0.6
3,235,687 - PfGW456L13_2896 0.89 -0.4
3,235,687 - PfGW456L13_2896 0.89 +0.9
3,235,687 - PfGW456L13_2896 0.89 +0.2
3,235,724 + -0.3
3,235,725 - +1.0
3,235,725 - +0.1
3,235,725 - -0.2
3,235,725 - -0.3
3,235,725 - +0.6
3,235,807 + -0.7
3,235,807 + +0.1
3,235,807 + +0.5
3,235,807 + -1.1
3,235,808 - +0.9
3,235,813 + +0.3
3,235,816 - +0.7
3,235,816 - +0.4
3,235,816 - +0.2
3,235,904 + +0.0
3,235,904 + -0.7
3,235,904 + +0.3
3,235,905 - +0.4
3,235,909 + -0.4
3,235,909 + -0.2
3,235,909 + -0.9
3,235,910 - +0.0
3,235,910 - -1.6
3,235,945 - PfGW456L13_2897 0.32 -0.1
3,235,945 - PfGW456L13_2897 0.32 +1.0
3,235,945 - PfGW456L13_2897 0.32 +1.0
3,236,009 - PfGW456L13_2897 0.89 -0.9
3,236,033 + +0.8
3,236,045 - -0.1
3,236,053 + -0.3
3,236,053 + -0.4
3,236,053 + -1.1
3,236,053 + -0.2
3,236,054 - +0.3
3,236,054 - +0.1
3,236,088 + +0.5
3,236,088 + -0.3
3,236,088 + -2.2
3,236,089 - +1.1
3,236,089 - -0.4
3,236,143 + -0.1
3,236,143 + +1.6
3,236,143 + +1.6
3,236,143 + -0.2
3,236,144 - +0.6
3,236,144 - +0.8
3,236,144 - -1.1
3,236,144 - -0.4
3,236,165 - -0.0
3,236,171 + -0.8
3,236,171 + +0.5
3,236,171 + -1.2
3,236,172 - +0.7
3,236,216 + -0.1
3,236,216 + +0.1
3,236,216 + -0.3
3,236,216 + +0.3
3,236,217 - +0.5
3,236,217 - -0.3
3,236,217 - -0.3
3,236,217 - -0.0
3,236,217 - -0.6
3,236,218 + +0.3
3,236,218 + +0.2
3,236,219 - +0.4
3,236,219 - -0.3
3,236,219 - -0.7
3,236,219 - -0.5
3,236,219 - +0.4
3,236,219 - +0.4
3,236,245 + +0.1
3,236,245 + -0.3
3,236,245 + +0.7
3,236,245 + +0.5
3,236,246 - -0.6
3,236,246 - +1.0
3,236,246 - -0.1
3,236,246 - +1.5
3,236,437 + PfGW456L13_2898 0.17 +0.7
3,236,438 - PfGW456L13_2898 0.17 +0.9
3,236,475 + PfGW456L13_2898 0.21 +0.7
3,236,476 - PfGW456L13_2898 0.21 -0.4
3,236,476 - PfGW456L13_2898 0.21 +0.5
3,236,476 - PfGW456L13_2898 0.21 +0.6
3,236,476 - PfGW456L13_2898 0.21 +0.0
3,236,560 + PfGW456L13_2898 0.30 -1.3
3,236,602 + PfGW456L13_2898 0.34 -1.1
3,236,637 + PfGW456L13_2898 0.38 +0.1
3,236,686 + PfGW456L13_2898 0.43 +0.4
3,236,686 + +0.5
3,236,686 + +2.8
3,236,686 + PfGW456L13_2898 0.43 +1.0
3,236,686 + PfGW456L13_2898 0.43 -0.5
3,236,686 + PfGW456L13_2898 0.43 -0.3
3,236,686 + PfGW456L13_2898 0.43 +0.2
3,236,686 + PfGW456L13_2898 0.43 +1.1
3,236,687 - PfGW456L13_2898 0.43 -0.7
3,236,687 - PfGW456L13_2898 0.43 -2.7
3,236,687 - PfGW456L13_2898 0.43 -0.2
3,236,687 - PfGW456L13_2898 0.43 +0.1
3,236,687 - PfGW456L13_2898 0.43 +0.5
3,236,687 - PfGW456L13_2898 0.43 -1.0
3,237,014 + PfGW456L13_2898 0.78 +0.5
3,237,031 + PfGW456L13_2898 0.80 -0.5
3,237,032 - PfGW456L13_2898 0.80 +1.1
3,237,052 + PfGW456L13_2898 0.82 +0.1
3,237,052 + PfGW456L13_2898 0.82 -0.3
3,237,052 + PfGW456L13_2898 0.82 +0.2
3,237,052 + PfGW456L13_2898 0.82 +0.9
3,237,053 - +0.5
3,237,053 - PfGW456L13_2898 0.82 +0.0
3,237,053 - PfGW456L13_2898 0.82 +0.3
3,237,053 - PfGW456L13_2898 0.82 +0.5
3,237,053 - PfGW456L13_2898 0.82 +0.3
3,237,068 + PfGW456L13_2898 0.84 -1.2
3,237,068 + PfGW456L13_2898 0.84 +1.1
3,237,068 + PfGW456L13_2898 0.84 +0.2
3,237,069 - PfGW456L13_2898 0.84 +0.1
3,237,168 - +0.5
3,237,217 + +0.3
3,237,217 + -0.1
3,237,217 + -0.9
3,237,218 - +0.7
3,237,298 + -0.5
3,237,299 - +0.2
3,237,319 + +0.6
3,237,319 + -0.8
3,237,319 + +0.0
3,237,320 - +0.1
3,237,516 - +0.2
3,237,580 + -0.6
3,237,732 + -0.4
3,237,732 + +0.1
3,237,732 + +0.6
3,237,732 + -2.3
3,237,733 - -0.7
3,237,733 - -0.1
3,237,791 + -0.0
3,237,791 + -1.3
3,237,792 - +0.1
3,237,792 - +0.3
3,237,854 + -0.4
3,237,928 + +0.2
3,237,929 - -0.3
3,237,949 + -0.8
3,237,949 + +0.2
3,237,950 - +0.3
3,238,095 - -0.7
3,238,095 - +0.2
3,238,105 + +1.4
3,238,177 + +1.5
3,238,178 - -0.7
3,238,178 - -0.5
3,238,178 - +0.3
3,238,195 + +0.2
3,238,195 + +0.0
3,238,195 + +0.6
3,238,196 - -0.3
3,238,196 - +0.0
3,238,196 - -0.5
3,238,196 - -0.4
3,238,199 + -1.1
3,238,199 + -0.2
3,238,199 + +0.2
3,238,199 + -1.8
3,238,199 + -0.4
3,238,199 + -1.2
3,238,200 - +1.4
3,238,200 - -0.5
3,238,200 - -0.2
3,238,200 - +0.8
3,238,200 - +0.4

Or see this region's nucleotide sequence