Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2527

Experiment: Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2526 and PfGW456L13_2527 are separated by 600 nucleotidesPfGW456L13_2527 and PfGW456L13_2528 are separated by 42 nucleotides PfGW456L13_2526 - 4-hydroxyphenylacetate 3-monooxygenase, reductase component (EC 1.6.8.-), at 2,793,539 to 2,794,054 _2526 PfGW456L13_2527 - hypothetical protein, at 2,794,655 to 2,795,257 _2527 PfGW456L13_2528 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 2,795,300 to 2,796,484 _2528 Position (kb) 2794 2795 2796Strain fitness (log2 ratio) -3 -2 -1 0 1at 2793.672 kb on + strand, within PfGW456L13_2526at 2793.726 kb on + strand, within PfGW456L13_2526at 2793.985 kb on + strand, within PfGW456L13_2526at 2794.135 kb on + strandat 2794.135 kb on + strandat 2794.136 kb on - strandat 2794.182 kb on - strandat 2794.182 kb on - strandat 2794.182 kb on - strandat 2794.182 kb on - strandat 2794.182 kb on - strandat 2794.182 kb on - strandat 2794.182 kb on - strandat 2794.186 kb on - strandat 2794.611 kb on + strandat 2794.611 kb on + strandat 2794.619 kb on - strandat 2794.735 kb on + strand, within PfGW456L13_2527at 2794.736 kb on - strand, within PfGW456L13_2527at 2794.981 kb on + strand, within PfGW456L13_2527at 2794.981 kb on + strand, within PfGW456L13_2527at 2794.985 kb on + strand, within PfGW456L13_2527at 2794.985 kb on + strand, within PfGW456L13_2527at 2794.985 kb on + strand, within PfGW456L13_2527at 2794.985 kb on + strand, within PfGW456L13_2527at 2794.985 kb on + strand, within PfGW456L13_2527at 2794.985 kb on + strand, within PfGW456L13_2527at 2794.985 kb on + strand, within PfGW456L13_2527at 2794.985 kb on + strand, within PfGW456L13_2527at 2794.985 kb on + strand, within PfGW456L13_2527at 2794.985 kb on + strand, within PfGW456L13_2527at 2794.985 kb on + strand, within PfGW456L13_2527at 2794.985 kb on + strand, within PfGW456L13_2527at 2795.002 kb on + strand, within PfGW456L13_2527at 2795.003 kb on - strand, within PfGW456L13_2527at 2795.062 kb on + strand, within PfGW456L13_2527at 2795.062 kb on + strand, within PfGW456L13_2527at 2795.062 kb on + strand, within PfGW456L13_2527at 2795.062 kb on + strand, within PfGW456L13_2527at 2795.063 kb on - strand, within PfGW456L13_2527at 2795.063 kb on - strand, within PfGW456L13_2527at 2795.063 kb on - strand, within PfGW456L13_2527at 2795.063 kb on - strand, within PfGW456L13_2527at 2795.146 kb on + strand, within PfGW456L13_2527at 2795.147 kb on - strand, within PfGW456L13_2527at 2795.147 kb on - strand, within PfGW456L13_2527at 2795.231 kb on - strandat 2795.239 kb on + strandat 2795.295 kb on + strandat 2795.295 kb on + strandat 2795.508 kb on + strand, within PfGW456L13_2528at 2795.509 kb on - strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.655 kb on - strand, within PfGW456L13_2528at 2795.655 kb on - strand, within PfGW456L13_2528at 2795.655 kb on - strand, within PfGW456L13_2528at 2795.655 kb on - strand, within PfGW456L13_2528at 2795.655 kb on - strand, within PfGW456L13_2528at 2795.656 kb on + strand, within PfGW456L13_2528at 2795.657 kb on - strand, within PfGW456L13_2528at 2795.799 kb on - strand, within PfGW456L13_2528at 2795.800 kb on + strand, within PfGW456L13_2528at 2795.801 kb on - strand, within PfGW456L13_2528

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.004 mg/ml
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2,793,672 + PfGW456L13_2526 0.26 +0.0
2,793,726 + PfGW456L13_2526 0.36 -0.2
2,793,985 + PfGW456L13_2526 0.86 -0.4
2,794,135 + +0.3
2,794,135 + -0.0
2,794,136 - +0.3
2,794,182 - -0.2
2,794,182 - +0.8
2,794,182 - +0.3
2,794,182 - +0.6
2,794,182 - +0.5
2,794,182 - -0.2
2,794,182 - -0.2
2,794,186 - +0.8
2,794,611 + +0.4
2,794,611 + +0.3
2,794,619 - -0.9
2,794,735 + PfGW456L13_2527 0.13 -0.8
2,794,736 - PfGW456L13_2527 0.13 +0.1
2,794,981 + PfGW456L13_2527 0.54 +0.3
2,794,981 + PfGW456L13_2527 0.54 +1.3
2,794,985 + PfGW456L13_2527 0.55 -0.2
2,794,985 + PfGW456L13_2527 0.55 -0.6
2,794,985 + PfGW456L13_2527 0.55 -1.1
2,794,985 + PfGW456L13_2527 0.55 +0.4
2,794,985 + PfGW456L13_2527 0.55 -1.6
2,794,985 + PfGW456L13_2527 0.55 +0.3
2,794,985 + PfGW456L13_2527 0.55 -0.5
2,794,985 + PfGW456L13_2527 0.55 -1.4
2,794,985 + PfGW456L13_2527 0.55 +0.1
2,794,985 + PfGW456L13_2527 0.55 -3.2
2,794,985 + PfGW456L13_2527 0.55 +0.3
2,794,985 + PfGW456L13_2527 0.55 -0.6
2,795,002 + PfGW456L13_2527 0.58 +0.5
2,795,003 - PfGW456L13_2527 0.58 +0.1
2,795,062 + PfGW456L13_2527 0.67 -1.1
2,795,062 + PfGW456L13_2527 0.67 +1.6
2,795,062 + PfGW456L13_2527 0.67 -0.0
2,795,062 + PfGW456L13_2527 0.67 -0.7
2,795,063 - PfGW456L13_2527 0.68 -0.8
2,795,063 - PfGW456L13_2527 0.68 -0.7
2,795,063 - PfGW456L13_2527 0.68 +0.1
2,795,063 - PfGW456L13_2527 0.68 +0.1
2,795,146 + PfGW456L13_2527 0.81 -0.6
2,795,147 - PfGW456L13_2527 0.82 -0.7
2,795,147 - PfGW456L13_2527 0.82 +0.2
2,795,231 - -0.2
2,795,239 + +0.0
2,795,295 + +0.6
2,795,295 + -0.6
2,795,508 + PfGW456L13_2528 0.18 +0.3
2,795,509 - PfGW456L13_2528 0.18 +0.2
2,795,654 + PfGW456L13_2528 0.30 +1.0
2,795,654 + PfGW456L13_2528 0.30 -1.4
2,795,654 + PfGW456L13_2528 0.30 +0.6
2,795,654 + PfGW456L13_2528 0.30 +0.6
2,795,654 + PfGW456L13_2528 0.30 +0.8
2,795,654 + PfGW456L13_2528 0.30 +0.2
2,795,654 + PfGW456L13_2528 0.30 -0.7
2,795,654 + PfGW456L13_2528 0.30 -0.5
2,795,654 + PfGW456L13_2528 0.30 +1.2
2,795,654 + PfGW456L13_2528 0.30 -0.4
2,795,654 + PfGW456L13_2528 0.30 +0.5
2,795,654 + PfGW456L13_2528 0.30 +0.5
2,795,654 + PfGW456L13_2528 0.30 +0.1
2,795,654 + PfGW456L13_2528 0.30 -0.8
2,795,655 - PfGW456L13_2528 0.30 -1.3
2,795,655 - PfGW456L13_2528 0.30 +0.3
2,795,655 - PfGW456L13_2528 0.30 -0.9
2,795,655 - PfGW456L13_2528 0.30 +0.2
2,795,655 - PfGW456L13_2528 0.30 +0.2
2,795,656 + PfGW456L13_2528 0.30 +1.2
2,795,657 - PfGW456L13_2528 0.30 +0.2
2,795,799 - PfGW456L13_2528 0.42 +0.4
2,795,800 + PfGW456L13_2528 0.42 -1.0
2,795,801 - PfGW456L13_2528 0.42 -0.2

Or see this region's nucleotide sequence