Strain Fitness in Pseudomonas sp. S08-1 around OH686_19760

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_19755 and OH686_19760 are separated by 58 nucleotidesOH686_19760 and OH686_19765 are separated by 56 nucleotidesOH686_19765 and OH686_19770 overlap by 1 nucleotides OH686_19755: OH686_19755 - Aspartyl aminopeptidase , at 4,046,744 to 4,048,033 _19755 OH686_19760: OH686_19760 - LSU rRNA pseudouridine(746) synthase or tRNA pseudouridine(32) synthase , at 4,048,092 to 4,048,727 _19760 OH686_19765: OH686_19765 - cell division topological specificity factor MinE, at 4,048,784 to 4,049,038 _19765 OH686_19770: OH686_19770 - septum site-determining protein MinD, at 4,049,038 to 4,049,850 _19770 Position (kb) 4048 4049Strain fitness (log2 ratio) -2 -1 0 1 2at 4047.310 kb on - strand, within OH686_19755at 4047.390 kb on + strand, within OH686_19755at 4047.390 kb on + strand, within OH686_19755at 4047.390 kb on + strand, within OH686_19755at 4047.390 kb on + strand, within OH686_19755at 4047.390 kb on + strand, within OH686_19755at 4047.390 kb on + strand, within OH686_19755at 4047.390 kb on + strand, within OH686_19755at 4047.391 kb on - strand, within OH686_19755at 4047.391 kb on - strand, within OH686_19755at 4047.391 kb on - strand, within OH686_19755at 4047.391 kb on - strand, within OH686_19755at 4047.391 kb on - strand, within OH686_19755at 4047.391 kb on - strand, within OH686_19755at 4047.391 kb on - strand, within OH686_19755at 4047.391 kb on - strand, within OH686_19755at 4047.405 kb on + strand, within OH686_19755at 4047.405 kb on + strand, within OH686_19755at 4047.405 kb on + strand, within OH686_19755at 4047.405 kb on + strand, within OH686_19755at 4047.405 kb on + strand, within OH686_19755at 4047.406 kb on - strand, within OH686_19755at 4047.406 kb on - strand, within OH686_19755at 4047.406 kb on - strand, within OH686_19755at 4047.406 kb on - strand, within OH686_19755at 4047.406 kb on - strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.876 kb on + strand, within OH686_19755at 4047.877 kb on - strand, within OH686_19755at 4047.877 kb on - strand, within OH686_19755at 4047.877 kb on - strand, within OH686_19755at 4047.877 kb on - strand, within OH686_19755at 4047.877 kb on - strand, within OH686_19755at 4047.877 kb on - strand, within OH686_19755at 4047.877 kb on - strand, within OH686_19755at 4047.880 kb on - strand, within OH686_19755at 4048.210 kb on + strand, within OH686_19760at 4048.210 kb on + strand, within OH686_19760at 4048.210 kb on + strand, within OH686_19760at 4048.210 kb on + strand, within OH686_19760at 4048.210 kb on + strand, within OH686_19760at 4048.210 kb on + strand, within OH686_19760at 4048.211 kb on - strand, within OH686_19760at 4048.211 kb on - strand, within OH686_19760at 4048.211 kb on - strand, within OH686_19760at 4048.211 kb on - strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.250 kb on + strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.251 kb on - strand, within OH686_19760at 4048.399 kb on + strand, within OH686_19760at 4048.462 kb on + strand, within OH686_19760at 4048.463 kb on - strand, within OH686_19760at 4048.463 kb on - strand, within OH686_19760at 4048.463 kb on - strand, within OH686_19760at 4048.878 kb on + strand, within OH686_19765at 4048.878 kb on + strand, within OH686_19765at 4048.878 kb on + strand, within OH686_19765at 4048.879 kb on - strand, within OH686_19765at 4048.879 kb on - strand, within OH686_19765at 4048.879 kb on - strand, within OH686_19765at 4049.138 kb on + strand, within OH686_19770at 4049.139 kb on - strand, within OH686_19770at 4049.306 kb on + strand, within OH686_19770at 4049.307 kb on - strand, within OH686_19770at 4049.307 kb on - strand, within OH686_19770at 4049.453 kb on + strand, within OH686_19770at 4049.453 kb on + strand, within OH686_19770at 4049.453 kb on + strand, within OH686_19770at 4049.453 kb on + strand, within OH686_19770at 4049.453 kb on + strand, within OH686_19770at 4049.453 kb on + strand, within OH686_19770at 4049.453 kb on + strand, within OH686_19770at 4049.454 kb on - strand, within OH686_19770at 4049.454 kb on - strand, within OH686_19770at 4049.454 kb on - strand, within OH686_19770at 4049.507 kb on + strand, within OH686_19770at 4049.507 kb on + strand, within OH686_19770at 4049.507 kb on + strand, within OH686_19770at 4049.507 kb on + strand, within OH686_19770at 4049.508 kb on - strand, within OH686_19770at 4049.508 kb on - strand, within OH686_19770at 4049.600 kb on + strand, within OH686_19770at 4049.600 kb on + strand, within OH686_19770at 4049.600 kb on + strand, within OH686_19770at 4049.601 kb on - strand, within OH686_19770at 4049.679 kb on - strand, within OH686_19770at 4049.679 kb on - strand, within OH686_19770at 4049.707 kb on + strand, within OH686_19770at 4049.708 kb on - strand, within OH686_19770at 4049.708 kb on - strand, within OH686_19770at 4049.708 kb on - strand, within OH686_19770at 4049.708 kb on - strand, within OH686_19770at 4049.708 kb on - strand, within OH686_19770at 4049.708 kb on - strand, within OH686_19770at 4049.708 kb on - strand, within OH686_19770

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,047,310 - OH686_19755 0.44 +1.4
4,047,390 + OH686_19755 0.50 -0.3
4,047,390 + OH686_19755 0.50 +0.5
4,047,390 + OH686_19755 0.50 -0.4
4,047,390 + OH686_19755 0.50 -0.1
4,047,390 + OH686_19755 0.50 -0.3
4,047,390 + OH686_19755 0.50 -1.2
4,047,390 + OH686_19755 0.50 -0.8
4,047,391 - OH686_19755 0.50 -0.1
4,047,391 - OH686_19755 0.50 +0.5
4,047,391 - OH686_19755 0.50 -0.2
4,047,391 - OH686_19755 0.50 -0.2
4,047,391 - OH686_19755 0.50 +0.8
4,047,391 - OH686_19755 0.50 +0.7
4,047,391 - OH686_19755 0.50 +2.0
4,047,391 - OH686_19755 0.50 -0.4
4,047,405 + OH686_19755 0.51 +0.3
4,047,405 + OH686_19755 0.51 +0.2
4,047,405 + OH686_19755 0.51 +0.5
4,047,405 + OH686_19755 0.51 +0.3
4,047,405 + OH686_19755 0.51 -0.0
4,047,406 - OH686_19755 0.51 -0.5
4,047,406 - OH686_19755 0.51 +0.5
4,047,406 - OH686_19755 0.51 +0.5
4,047,406 - OH686_19755 0.51 -0.2
4,047,406 - OH686_19755 0.51 -0.0
4,047,876 + OH686_19755 0.88 -0.6
4,047,876 + OH686_19755 0.88 -0.2
4,047,876 + OH686_19755 0.88 -0.1
4,047,876 + OH686_19755 0.88 -0.1
4,047,876 + OH686_19755 0.88 -0.2
4,047,876 + OH686_19755 0.88 -0.7
4,047,876 + OH686_19755 0.88 +0.2
4,047,876 + OH686_19755 0.88 -0.1
4,047,876 + OH686_19755 0.88 -0.1
4,047,876 + OH686_19755 0.88 +0.6
4,047,876 + OH686_19755 0.88 +0.5
4,047,876 + OH686_19755 0.88 -0.0
4,047,877 - OH686_19755 0.88 +0.7
4,047,877 - OH686_19755 0.88 +0.3
4,047,877 - OH686_19755 0.88 -1.2
4,047,877 - OH686_19755 0.88 -0.2
4,047,877 - OH686_19755 0.88 +1.5
4,047,877 - OH686_19755 0.88 +0.6
4,047,877 - OH686_19755 0.88 -0.6
4,047,880 - OH686_19755 0.88 -0.7
4,048,210 + OH686_19760 0.19 +0.2
4,048,210 + OH686_19760 0.19 -0.5
4,048,210 + OH686_19760 0.19 +0.1
4,048,210 + OH686_19760 0.19 +0.5
4,048,210 + OH686_19760 0.19 +0.6
4,048,210 + OH686_19760 0.19 -1.2
4,048,211 - OH686_19760 0.19 -0.4
4,048,211 - OH686_19760 0.19 -0.4
4,048,211 - OH686_19760 0.19 -1.2
4,048,211 - OH686_19760 0.19 -0.5
4,048,250 + OH686_19760 0.25 -0.2
4,048,250 + OH686_19760 0.25 -0.3
4,048,250 + OH686_19760 0.25 +1.0
4,048,250 + OH686_19760 0.25 +1.8
4,048,250 + OH686_19760 0.25 -0.4
4,048,250 + OH686_19760 0.25 -0.3
4,048,250 + OH686_19760 0.25 -2.2
4,048,250 + OH686_19760 0.25 +0.7
4,048,250 + OH686_19760 0.25 +0.1
4,048,250 + OH686_19760 0.25 +0.9
4,048,250 + OH686_19760 0.25 -0.1
4,048,250 + OH686_19760 0.25 -0.6
4,048,250 + OH686_19760 0.25 +2.0
4,048,250 + OH686_19760 0.25 +1.0
4,048,251 - OH686_19760 0.25 +0.2
4,048,251 - OH686_19760 0.25 +0.9
4,048,251 - OH686_19760 0.25 -1.0
4,048,251 - OH686_19760 0.25 -0.1
4,048,251 - OH686_19760 0.25 +0.5
4,048,251 - OH686_19760 0.25 -0.7
4,048,251 - OH686_19760 0.25 -0.7
4,048,251 - OH686_19760 0.25 +0.8
4,048,251 - OH686_19760 0.25 -0.8
4,048,251 - OH686_19760 0.25 +0.7
4,048,251 - OH686_19760 0.25 +1.4
4,048,251 - OH686_19760 0.25 +0.2
4,048,251 - OH686_19760 0.25 +1.5
4,048,251 - OH686_19760 0.25 +0.2
4,048,251 - OH686_19760 0.25 -0.1
4,048,251 - OH686_19760 0.25 -0.3
4,048,251 - OH686_19760 0.25 -0.7
4,048,251 - OH686_19760 0.25 -0.2
4,048,399 + OH686_19760 0.48 -0.0
4,048,462 + OH686_19760 0.58 +0.2
4,048,463 - OH686_19760 0.58 -0.6
4,048,463 - OH686_19760 0.58 -0.7
4,048,463 - OH686_19760 0.58 -0.1
4,048,878 + OH686_19765 0.37 -0.2
4,048,878 + OH686_19765 0.37 -1.7
4,048,878 + OH686_19765 0.37 -0.7
4,048,879 - OH686_19765 0.37 -2.5
4,048,879 - OH686_19765 0.37 -0.6
4,048,879 - OH686_19765 0.37 -0.9
4,049,138 + OH686_19770 0.12 +0.5
4,049,139 - OH686_19770 0.12 -0.5
4,049,306 + OH686_19770 0.33 -0.5
4,049,307 - OH686_19770 0.33 +0.8
4,049,307 - OH686_19770 0.33 -0.5
4,049,453 + OH686_19770 0.51 +0.5
4,049,453 + OH686_19770 0.51 -0.2
4,049,453 + OH686_19770 0.51 -0.8
4,049,453 + OH686_19770 0.51 -0.2
4,049,453 + OH686_19770 0.51 +0.6
4,049,453 + OH686_19770 0.51 -0.5
4,049,453 + OH686_19770 0.51 -0.8
4,049,454 - OH686_19770 0.51 -0.8
4,049,454 - OH686_19770 0.51 +2.1
4,049,454 - OH686_19770 0.51 -0.5
4,049,507 + OH686_19770 0.58 -0.2
4,049,507 + OH686_19770 0.58 -1.5
4,049,507 + OH686_19770 0.58 -1.0
4,049,507 + OH686_19770 0.58 +0.3
4,049,508 - OH686_19770 0.58 +0.8
4,049,508 - OH686_19770 0.58 -0.5
4,049,600 + OH686_19770 0.69 -0.2
4,049,600 + OH686_19770 0.69 +0.5
4,049,600 + OH686_19770 0.69 +0.8
4,049,601 - OH686_19770 0.69 +0.5
4,049,679 - OH686_19770 0.79 -1.0
4,049,679 - OH686_19770 0.79 -1.4
4,049,707 + OH686_19770 0.82 -1.0
4,049,708 - OH686_19770 0.82 +0.8
4,049,708 - OH686_19770 0.82 -0.2
4,049,708 - OH686_19770 0.82 -1.0
4,049,708 - OH686_19770 0.82 -0.8
4,049,708 - OH686_19770 0.82 +0.3
4,049,708 - OH686_19770 0.82 +1.0
4,049,708 - OH686_19770 0.82 +0.8

Or see this region's nucleotide sequence