Strain Fitness in Pseudomonas sp. S08-1 around OH686_17900

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_17895 and OH686_17900 are separated by 116 nucleotidesOH686_17900 and OH686_17905 are separated by 107 nucleotides OH686_17895: OH686_17895 - ferrochelatase, at 3,729,588 to 3,730,610 _17895 OH686_17900: OH686_17900 - hypothetical protein, at 3,730,727 to 3,731,497 _17900 OH686_17905: OH686_17905 - Two-component transcriptional response regulator, LuxR family, at 3,731,605 to 3,733,032 _17905 Position (kb) 3730 3731 3732Strain fitness (log2 ratio) -2 -1 0 1at 3730.725 kb on + strandat 3730.725 kb on + strandat 3730.725 kb on + strandat 3730.726 kb on - strandat 3730.726 kb on - strandat 3730.726 kb on - strandat 3730.728 kb on + strandat 3730.729 kb on - strandat 3730.729 kb on - strandat 3731.052 kb on + strand, within OH686_17900at 3731.052 kb on + strand, within OH686_17900at 3731.052 kb on + strand, within OH686_17900at 3731.052 kb on + strand, within OH686_17900at 3731.052 kb on + strand, within OH686_17900at 3731.053 kb on - strand, within OH686_17900at 3731.163 kb on + strand, within OH686_17900at 3731.163 kb on + strand, within OH686_17900at 3731.163 kb on + strand, within OH686_17900at 3731.163 kb on + strand, within OH686_17900at 3731.163 kb on + strand, within OH686_17900at 3731.163 kb on + strand, within OH686_17900at 3731.163 kb on + strand, within OH686_17900at 3731.163 kb on + strand, within OH686_17900at 3731.163 kb on + strand, within OH686_17900at 3731.163 kb on + strand, within OH686_17900at 3731.163 kb on + strand, within OH686_17900at 3731.163 kb on + strand, within OH686_17900at 3731.163 kb on + strand, within OH686_17900at 3731.163 kb on + strand, within OH686_17900at 3731.163 kb on + strand, within OH686_17900at 3731.163 kb on + strand, within OH686_17900at 3731.163 kb on + strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.164 kb on - strand, within OH686_17900at 3731.265 kb on - strand, within OH686_17900at 3731.357 kb on + strand, within OH686_17900at 3731.357 kb on + strand, within OH686_17900at 3731.959 kb on - strand, within OH686_17905at 3731.998 kb on - strand, within OH686_17905at 3731.998 kb on - strand, within OH686_17905at 3732.070 kb on + strand, within OH686_17905at 3732.070 kb on + strand, within OH686_17905at 3732.070 kb on + strand, within OH686_17905at 3732.070 kb on + strand, within OH686_17905at 3732.070 kb on + strand, within OH686_17905at 3732.070 kb on + strand, within OH686_17905at 3732.070 kb on + strand, within OH686_17905at 3732.070 kb on + strand, within OH686_17905at 3732.070 kb on + strand, within OH686_17905at 3732.071 kb on - strand, within OH686_17905at 3732.071 kb on - strand, within OH686_17905at 3732.071 kb on - strand, within OH686_17905at 3732.071 kb on - strand, within OH686_17905at 3732.071 kb on - strand, within OH686_17905at 3732.071 kb on - strand, within OH686_17905at 3732.071 kb on - strand, within OH686_17905at 3732.071 kb on - strand, within OH686_17905at 3732.071 kb on - strand, within OH686_17905at 3732.071 kb on - strand, within OH686_17905at 3732.071 kb on - strand, within OH686_17905at 3732.071 kb on - strand, within OH686_17905at 3732.071 kb on - strand, within OH686_17905at 3732.071 kb on - strand, within OH686_17905at 3732.322 kb on + strand, within OH686_17905at 3732.366 kb on - strand, within OH686_17905at 3732.450 kb on + strand, within OH686_17905at 3732.450 kb on + strand, within OH686_17905at 3732.450 kb on + strand, within OH686_17905at 3732.450 kb on + strand, within OH686_17905at 3732.450 kb on + strand, within OH686_17905at 3732.450 kb on + strand, within OH686_17905at 3732.451 kb on - strand, within OH686_17905at 3732.451 kb on - strand, within OH686_17905at 3732.451 kb on - strand, within OH686_17905at 3732.451 kb on - strand, within OH686_17905at 3732.451 kb on - strand, within OH686_17905

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,730,725 + +0.2
3,730,725 + -0.1
3,730,725 + +0.6
3,730,726 - -1.0
3,730,726 - -0.1
3,730,726 - +0.8
3,730,728 + +0.8
3,730,729 - +1.3
3,730,729 - +0.9
3,731,052 + OH686_17900 0.42 -1.9
3,731,052 + OH686_17900 0.42 +0.4
3,731,052 + OH686_17900 0.42 +0.2
3,731,052 + OH686_17900 0.42 -0.4
3,731,052 + OH686_17900 0.42 +0.7
3,731,053 - OH686_17900 0.42 +1.2
3,731,163 + OH686_17900 0.57 -0.4
3,731,163 + OH686_17900 0.57 -0.3
3,731,163 + OH686_17900 0.57 +0.4
3,731,163 + OH686_17900 0.57 -1.8
3,731,163 + OH686_17900 0.57 +0.4
3,731,163 + OH686_17900 0.57 -1.5
3,731,163 + OH686_17900 0.57 -0.6
3,731,163 + OH686_17900 0.57 -0.8
3,731,163 + OH686_17900 0.57 +0.1
3,731,163 + OH686_17900 0.57 -0.4
3,731,163 + OH686_17900 0.57 -0.2
3,731,163 + OH686_17900 0.57 +0.4
3,731,163 + OH686_17900 0.57 +0.0
3,731,163 + OH686_17900 0.57 -0.3
3,731,163 + OH686_17900 0.57 +0.9
3,731,163 + OH686_17900 0.57 -0.1
3,731,163 + OH686_17900 0.57 -0.4
3,731,164 - OH686_17900 0.57 -0.2
3,731,164 - OH686_17900 0.57 -0.2
3,731,164 - OH686_17900 0.57 +0.9
3,731,164 - OH686_17900 0.57 -0.3
3,731,164 - OH686_17900 0.57 -0.0
3,731,164 - OH686_17900 0.57 +0.1
3,731,164 - OH686_17900 0.57 -0.2
3,731,164 - OH686_17900 0.57 +0.9
3,731,164 - OH686_17900 0.57 -0.1
3,731,164 - OH686_17900 0.57 +1.0
3,731,164 - OH686_17900 0.57 +1.0
3,731,164 - OH686_17900 0.57 -0.7
3,731,164 - OH686_17900 0.57 +0.7
3,731,164 - OH686_17900 0.57 -0.4
3,731,164 - OH686_17900 0.57 -0.1
3,731,164 - OH686_17900 0.57 +0.6
3,731,164 - OH686_17900 0.57 -0.8
3,731,164 - OH686_17900 0.57 +0.7
3,731,164 - OH686_17900 0.57 -0.2
3,731,164 - OH686_17900 0.57 -0.8
3,731,164 - OH686_17900 0.57 -0.4
3,731,164 - OH686_17900 0.57 -1.6
3,731,164 - OH686_17900 0.57 +1.0
3,731,164 - OH686_17900 0.57 -1.7
3,731,164 - OH686_17900 0.57 -0.1
3,731,265 - OH686_17900 0.70 -0.7
3,731,357 + OH686_17900 0.82 -0.0
3,731,357 + OH686_17900 0.82 -0.5
3,731,959 - OH686_17905 0.25 -2.4
3,731,998 - OH686_17905 0.28 -0.6
3,731,998 - OH686_17905 0.28 +0.4
3,732,070 + OH686_17905 0.33 +0.7
3,732,070 + OH686_17905 0.33 +1.6
3,732,070 + OH686_17905 0.33 +0.2
3,732,070 + OH686_17905 0.33 -0.8
3,732,070 + OH686_17905 0.33 -0.7
3,732,070 + OH686_17905 0.33 -0.1
3,732,070 + OH686_17905 0.33 -1.0
3,732,070 + OH686_17905 0.33 +1.4
3,732,070 + OH686_17905 0.33 -0.1
3,732,071 - OH686_17905 0.33 -0.3
3,732,071 - OH686_17905 0.33 -0.7
3,732,071 - OH686_17905 0.33 +0.3
3,732,071 - OH686_17905 0.33 -0.0
3,732,071 - OH686_17905 0.33 +0.2
3,732,071 - OH686_17905 0.33 -0.0
3,732,071 - OH686_17905 0.33 +0.1
3,732,071 - OH686_17905 0.33 -0.3
3,732,071 - OH686_17905 0.33 -0.0
3,732,071 - OH686_17905 0.33 -0.2
3,732,071 - OH686_17905 0.33 +0.3
3,732,071 - OH686_17905 0.33 +0.9
3,732,071 - OH686_17905 0.33 -0.2
3,732,071 - OH686_17905 0.33 -0.2
3,732,322 + OH686_17905 0.50 -0.2
3,732,366 - OH686_17905 0.53 +0.9
3,732,450 + OH686_17905 0.59 -0.6
3,732,450 + OH686_17905 0.59 -0.3
3,732,450 + OH686_17905 0.59 +0.4
3,732,450 + OH686_17905 0.59 -0.4
3,732,450 + OH686_17905 0.59 -0.4
3,732,450 + OH686_17905 0.59 +0.0
3,732,451 - OH686_17905 0.59 -0.3
3,732,451 - OH686_17905 0.59 -0.7
3,732,451 - OH686_17905 0.59 +0.9
3,732,451 - OH686_17905 0.59 +0.8
3,732,451 - OH686_17905 0.59 -0.1

Or see this region's nucleotide sequence