Strain Fitness in Pseudomonas sp. S08-1 around OH686_08535

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_08525 and OH686_08530 overlap by 14 nucleotidesOH686_08530 and OH686_08535 overlap by 1 nucleotidesOH686_08535 and OH686_08540 are separated by 141 nucleotides OH686_08525: OH686_08525 - LPS export ABC transporter periplasmic protein LptC, at 1,733,443 to 1,734,012 _08525 OH686_08530: OH686_08530 - lipopolysaccharide transport periplasmic protein LptA, at 1,733,999 to 1,734,544 _08530 OH686_08535: OH686_08535 - LPS export ABC transporter ATP-binding protein, at 1,734,544 to 1,735,269 _08535 OH686_08540: OH686_08540 - RNA polymerase sigma-54 factor, at 1,735,411 to 1,736,913 _08540 Position (kb) 1734 1735 1736Strain fitness (log2 ratio) -3 -2 -1 0 1at 1733.861 kb on + strand, within OH686_08525at 1733.861 kb on + strand, within OH686_08525at 1733.861 kb on + strand, within OH686_08525at 1733.861 kb on + strand, within OH686_08525at 1733.878 kb on + strand, within OH686_08525at 1733.878 kb on + strand, within OH686_08525at 1733.987 kb on + strandat 1733.987 kb on + strandat 1733.987 kb on + strandat 1733.987 kb on + strandat 1733.987 kb on + strandat 1733.987 kb on + strandat 1733.987 kb on + strandat 1733.987 kb on + strandat 1733.987 kb on + strandat 1733.987 kb on + strandat 1735.303 kb on + strandat 1735.304 kb on - strandat 1735.325 kb on + strandat 1735.327 kb on + strandat 1735.328 kb on - strandat 1735.328 kb on - strandat 1735.340 kb on - strandat 1735.395 kb on + strandat 1735.395 kb on + strandat 1735.424 kb on + strandat 1735.424 kb on + strandat 1735.424 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,733,861 + OH686_08525 0.73 -2.1
1,733,861 + OH686_08525 0.73 -2.4
1,733,861 + OH686_08525 0.73 -1.5
1,733,861 + OH686_08525 0.73 -2.5
1,733,878 + OH686_08525 0.76 -3.2
1,733,878 + OH686_08525 0.76 +0.2
1,733,987 + -0.1
1,733,987 + -0.5
1,733,987 + -0.5
1,733,987 + -0.8
1,733,987 + -0.5
1,733,987 + -0.9
1,733,987 + +0.3
1,733,987 + +0.0
1,733,987 + -0.4
1,733,987 + +0.8
1,735,303 + -0.7
1,735,304 - +0.1
1,735,325 + -0.3
1,735,327 + +0.5
1,735,328 - -0.4
1,735,328 - +0.8
1,735,340 - +0.2
1,735,395 + +0.2
1,735,395 + +0.2
1,735,424 + +0.4
1,735,424 + +0.9
1,735,424 + -0.1

Or see this region's nucleotide sequence