Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_08525 and OH686_08530 overlap by 14 nucleotides OH686_08530 and OH686_08535 overlap by 1 nucleotides OH686_08535 and OH686_08540 are separated by 141 nucleotides
OH686_08525: OH686_08525 - LPS export ABC transporter periplasmic protein LptC, at 1,733,443 to 1,734,012
_08525
OH686_08530: OH686_08530 - lipopolysaccharide transport periplasmic protein LptA, at 1,733,999 to 1,734,544
_08530
OH686_08535: OH686_08535 - LPS export ABC transporter ATP-binding protein, at 1,734,544 to 1,735,269
_08535
OH686_08540: OH686_08540 - RNA polymerase sigma-54 factor, at 1,735,411 to 1,736,913
_08540
Position (kb)
1734
1735
1736 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1733.861 kb on + strand, within OH686_08525 at 1733.861 kb on + strand, within OH686_08525 at 1733.861 kb on + strand, within OH686_08525 at 1733.861 kb on + strand, within OH686_08525 at 1733.878 kb on + strand, within OH686_08525 at 1733.878 kb on + strand, within OH686_08525 at 1733.987 kb on + strand at 1733.987 kb on + strand at 1733.987 kb on + strand at 1733.987 kb on + strand at 1733.987 kb on + strand at 1733.987 kb on + strand at 1733.987 kb on + strand at 1733.987 kb on + strand at 1733.987 kb on + strand at 1733.987 kb on + strand at 1735.303 kb on + strand at 1735.304 kb on - strand at 1735.325 kb on + strand at 1735.327 kb on + strand at 1735.328 kb on - strand at 1735.328 kb on - strand at 1735.340 kb on - strand at 1735.395 kb on + strand at 1735.395 kb on + strand at 1735.424 kb on + strand at 1735.424 kb on + strand at 1735.424 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 1,733,861 + OH686_08525 0.73 -2.1 1,733,861 + OH686_08525 0.73 -2.4 1,733,861 + OH686_08525 0.73 -1.5 1,733,861 + OH686_08525 0.73 -2.5 1,733,878 + OH686_08525 0.76 -3.2 1,733,878 + OH686_08525 0.76 +0.2 1,733,987 + -0.1 1,733,987 + -0.5 1,733,987 + -0.5 1,733,987 + -0.8 1,733,987 + -0.5 1,733,987 + -0.9 1,733,987 + +0.3 1,733,987 + +0.0 1,733,987 + -0.4 1,733,987 + +0.8 1,735,303 + -0.7 1,735,304 - +0.1 1,735,325 + -0.3 1,735,327 + +0.5 1,735,328 - -0.4 1,735,328 - +0.8 1,735,340 - +0.2 1,735,395 + +0.2 1,735,395 + +0.2 1,735,424 + +0.4 1,735,424 + +0.9 1,735,424 + -0.1
Or see this region's nucleotide sequence