Strain Fitness in Pseudomonas sp. S08-1 around OH686_03105

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_03090 and OH686_03095 are separated by 58 nucleotidesOH686_03095 and OH686_03100 are separated by 40 nucleotidesOH686_03100 and OH686_03105 overlap by 93 nucleotidesOH686_03105 and OH686_03110 are separated by 54 nucleotides OH686_03090: OH686_03090 - Chemotactic transducer-related protein, at 645,906 to 648,860 _03090 OH686_03095: OH686_03095 - uncharacterized protein YggL, at 648,919 to 649,260 _03095 OH686_03100: OH686_03100 - hypothetical protein' product='hypothetical protein, at 649,301 to 649,648 _03100 OH686_03105: OH686_03105 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 649,556 to 650,890 _03105 OH686_03110: OH686_03110 - 23S rRNA (guanine(2445)-N(2))-methyltransferase / 23S rRNA (guanine(2069)-N(7))-methyltransferase , at 650,945 to 653,137 _03110 Position (kb) 649 650 651Strain fitness (log2 ratio) -2 -1 0 1 2at 648.580 kb on + strandat 648.663 kb on + strandat 648.663 kb on + strandat 648.664 kb on - strandat 648.664 kb on - strandat 648.664 kb on - strandat 648.780 kb on + strandat 648.781 kb on - strandat 648.792 kb on + strandat 648.792 kb on + strandat 648.793 kb on - strandat 648.793 kb on - strandat 649.073 kb on + strand, within OH686_03095at 649.073 kb on + strand, within OH686_03095at 649.074 kb on - strand, within OH686_03095at 649.074 kb on - strand, within OH686_03095at 649.074 kb on - strand, within OH686_03095at 649.074 kb on - strand, within OH686_03095at 649.091 kb on + strand, within OH686_03095at 649.091 kb on + strand, within OH686_03095at 649.091 kb on + strand, within OH686_03095at 649.091 kb on + strand, within OH686_03095at 649.092 kb on - strand, within OH686_03095at 649.092 kb on - strand, within OH686_03095at 649.092 kb on - strand, within OH686_03095at 649.092 kb on - strand, within OH686_03095at 649.092 kb on - strand, within OH686_03095at 649.260 kb on + strandat 649.261 kb on - strandat 649.261 kb on - strandat 649.261 kb on - strandat 649.261 kb on - strandat 649.270 kb on + strandat 649.270 kb on + strandat 649.270 kb on + strandat 649.270 kb on + strandat 649.270 kb on + strandat 649.270 kb on + strandat 649.270 kb on + strandat 649.270 kb on + strandat 649.270 kb on + strandat 649.271 kb on - strandat 649.271 kb on - strandat 649.271 kb on - strandat 649.271 kb on - strandat 649.271 kb on - strandat 649.271 kb on - strandat 649.271 kb on - strandat 649.271 kb on - strandat 649.271 kb on - strandat 649.271 kb on - strandat 649.271 kb on - strandat 649.274 kb on + strandat 649.274 kb on + strandat 649.274 kb on + strandat 649.274 kb on + strandat 649.274 kb on + strandat 649.275 kb on - strandat 649.275 kb on - strandat 649.275 kb on - strandat 649.302 kb on + strandat 649.302 kb on + strandat 649.303 kb on - strandat 649.340 kb on + strand, within OH686_03100at 649.340 kb on + strand, within OH686_03100at 649.340 kb on + strand, within OH686_03100at 649.340 kb on + strand, within OH686_03100at 649.340 kb on + strand, within OH686_03100at 649.341 kb on - strand, within OH686_03100at 649.341 kb on - strand, within OH686_03100at 649.341 kb on - strand, within OH686_03100at 649.392 kb on + strand, within OH686_03100at 649.392 kb on + strand, within OH686_03100at 649.392 kb on + strand, within OH686_03100at 649.392 kb on + strand, within OH686_03100at 649.392 kb on + strand, within OH686_03100at 649.392 kb on + strand, within OH686_03100at 649.393 kb on - strand, within OH686_03100at 649.393 kb on - strand, within OH686_03100at 649.608 kb on + strandat 649.700 kb on + strand, within OH686_03105at 649.700 kb on + strand, within OH686_03105at 649.701 kb on - strand, within OH686_03105at 649.701 kb on - strand, within OH686_03105at 649.701 kb on - strand, within OH686_03105at 649.701 kb on - strand, within OH686_03105at 649.751 kb on + strand, within OH686_03105at 649.752 kb on - strand, within OH686_03105at 649.752 kb on - strand, within OH686_03105at 649.752 kb on - strand, within OH686_03105at 649.752 kb on - strand, within OH686_03105at 649.796 kb on + strand, within OH686_03105at 649.796 kb on + strand, within OH686_03105at 649.796 kb on + strand, within OH686_03105at 649.796 kb on + strand, within OH686_03105at 649.796 kb on + strand, within OH686_03105at 649.797 kb on - strand, within OH686_03105at 649.797 kb on - strand, within OH686_03105at 649.797 kb on - strand, within OH686_03105at 649.933 kb on - strand, within OH686_03105at 649.933 kb on - strand, within OH686_03105at 650.007 kb on + strand, within OH686_03105at 650.007 kb on + strand, within OH686_03105at 650.007 kb on + strand, within OH686_03105at 650.008 kb on - strand, within OH686_03105at 650.008 kb on - strand, within OH686_03105at 650.008 kb on - strand, within OH686_03105at 650.008 kb on - strand, within OH686_03105at 650.008 kb on - strand, within OH686_03105at 650.008 kb on - strand, within OH686_03105at 650.008 kb on - strand, within OH686_03105at 650.008 kb on - strand, within OH686_03105at 650.008 kb on - strand, within OH686_03105at 650.147 kb on + strand, within OH686_03105at 650.147 kb on + strand, within OH686_03105at 650.147 kb on + strand, within OH686_03105at 650.147 kb on + strand, within OH686_03105at 650.147 kb on + strand, within OH686_03105at 650.148 kb on - strand, within OH686_03105at 650.225 kb on + strand, within OH686_03105at 650.225 kb on + strand, within OH686_03105at 650.225 kb on + strand, within OH686_03105at 650.226 kb on - strand, within OH686_03105at 650.226 kb on - strand, within OH686_03105at 650.226 kb on - strand, within OH686_03105at 650.226 kb on - strand, within OH686_03105at 650.226 kb on - strand, within OH686_03105at 650.252 kb on + strand, within OH686_03105at 650.252 kb on + strand, within OH686_03105at 650.252 kb on + strand, within OH686_03105at 650.253 kb on - strand, within OH686_03105at 650.402 kb on + strand, within OH686_03105at 650.402 kb on + strand, within OH686_03105at 650.402 kb on + strand, within OH686_03105at 650.402 kb on + strand, within OH686_03105at 650.402 kb on + strand, within OH686_03105at 650.402 kb on + strand, within OH686_03105at 650.402 kb on + strand, within OH686_03105at 650.402 kb on + strand, within OH686_03105at 650.402 kb on + strand, within OH686_03105at 650.403 kb on - strand, within OH686_03105at 650.403 kb on - strand, within OH686_03105at 650.403 kb on - strand, within OH686_03105at 650.403 kb on - strand, within OH686_03105at 650.403 kb on - strand, within OH686_03105at 650.403 kb on - strand, within OH686_03105at 650.403 kb on - strand, within OH686_03105at 650.403 kb on - strand, within OH686_03105at 650.403 kb on - strand, within OH686_03105at 650.403 kb on - strand, within OH686_03105at 650.403 kb on - strand, within OH686_03105at 650.403 kb on - strand, within OH686_03105at 650.403 kb on - strand, within OH686_03105at 650.403 kb on - strand, within OH686_03105at 650.403 kb on - strand, within OH686_03105at 650.403 kb on - strand, within OH686_03105at 650.403 kb on - strand, within OH686_03105at 650.403 kb on - strand, within OH686_03105at 650.408 kb on - strand, within OH686_03105at 650.408 kb on - strand, within OH686_03105at 650.408 kb on - strand, within OH686_03105at 650.408 kb on - strand, within OH686_03105at 650.408 kb on - strand, within OH686_03105at 650.408 kb on - strand, within OH686_03105at 650.636 kb on + strand, within OH686_03105at 650.636 kb on + strand, within OH686_03105at 650.636 kb on + strand, within OH686_03105at 650.637 kb on - strand, within OH686_03105at 650.879 kb on + strandat 650.879 kb on + strandat 650.879 kb on + strandat 650.879 kb on + strandat 650.879 kb on + strandat 650.879 kb on + strandat 650.879 kb on + strandat 650.880 kb on - strandat 650.880 kb on - strandat 650.880 kb on - strandat 650.880 kb on - strandat 650.880 kb on - strandat 650.880 kb on - strandat 650.880 kb on - strandat 650.933 kb on - strandat 651.040 kb on - strandat 651.093 kb on + strandat 651.093 kb on + strandat 651.093 kb on + strandat 651.093 kb on + strandat 651.093 kb on + strandat 651.093 kb on + strandat 651.094 kb on - strandat 651.094 kb on - strandat 651.094 kb on - strandat 651.094 kb on - strandat 651.225 kb on + strand, within OH686_03110at 651.226 kb on - strand, within OH686_03110at 651.330 kb on + strand, within OH686_03110at 651.330 kb on + strand, within OH686_03110at 651.330 kb on + strand, within OH686_03110at 651.330 kb on + strand, within OH686_03110at 651.330 kb on + strand, within OH686_03110at 651.331 kb on - strand, within OH686_03110at 651.331 kb on - strand, within OH686_03110at 651.331 kb on - strand, within OH686_03110at 651.331 kb on - strand, within OH686_03110at 651.331 kb on - strand, within OH686_03110at 651.331 kb on - strand, within OH686_03110at 651.331 kb on - strand, within OH686_03110at 651.331 kb on - strand, within OH686_03110at 651.331 kb on - strand, within OH686_03110at 651.405 kb on + strand, within OH686_03110at 651.405 kb on + strand, within OH686_03110at 651.405 kb on + strand, within OH686_03110at 651.405 kb on + strand, within OH686_03110at 651.405 kb on + strand, within OH686_03110at 651.405 kb on + strand, within OH686_03110at 651.405 kb on + strand, within OH686_03110at 651.405 kb on + strand, within OH686_03110at 651.406 kb on - strand, within OH686_03110at 651.406 kb on - strand, within OH686_03110at 651.406 kb on - strand, within OH686_03110at 651.406 kb on - strand, within OH686_03110at 651.406 kb on - strand, within OH686_03110at 651.499 kb on - strand, within OH686_03110at 651.576 kb on + strand, within OH686_03110at 651.576 kb on + strand, within OH686_03110at 651.577 kb on - strand, within OH686_03110at 651.577 kb on - strand, within OH686_03110at 651.577 kb on - strand, within OH686_03110at 651.633 kb on - strand, within OH686_03110at 651.717 kb on + strand, within OH686_03110at 651.717 kb on + strand, within OH686_03110at 651.717 kb on + strand, within OH686_03110at 651.744 kb on + strand, within OH686_03110at 651.746 kb on + strand, within OH686_03110at 651.746 kb on + strand, within OH686_03110at 651.746 kb on + strand, within OH686_03110at 651.746 kb on + strand, within OH686_03110at 651.747 kb on - strand, within OH686_03110at 651.747 kb on - strand, within OH686_03110at 651.747 kb on - strand, within OH686_03110at 651.747 kb on - strand, within OH686_03110at 651.747 kb on - strand, within OH686_03110at 651.747 kb on - strand, within OH686_03110at 651.747 kb on - strand, within OH686_03110at 651.747 kb on - strand, within OH686_03110at 651.747 kb on - strand, within OH686_03110at 651.747 kb on - strand, within OH686_03110at 651.747 kb on - strand, within OH686_03110at 651.766 kb on - strand, within OH686_03110at 651.766 kb on - strand, within OH686_03110at 651.786 kb on + strand, within OH686_03110at 651.786 kb on + strand, within OH686_03110at 651.786 kb on + strand, within OH686_03110at 651.786 kb on + strand, within OH686_03110at 651.786 kb on + strand, within OH686_03110at 651.787 kb on - strand, within OH686_03110at 651.787 kb on - strand, within OH686_03110at 651.796 kb on - strand, within OH686_03110

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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648,580 + -0.7
648,663 + +0.7
648,663 + -0.1
648,664 - +0.1
648,664 - +0.0
648,664 - +0.2
648,780 + -1.0
648,781 - -0.1
648,792 + +0.1
648,792 + -0.7
648,793 - -0.4
648,793 - +0.5
649,073 + OH686_03095 0.45 -0.6
649,073 + OH686_03095 0.45 -1.7
649,074 - OH686_03095 0.45 +1.7
649,074 - OH686_03095 0.45 +1.0
649,074 - OH686_03095 0.45 -0.6
649,074 - OH686_03095 0.45 -1.6
649,091 + OH686_03095 0.50 -0.8
649,091 + OH686_03095 0.50 +0.7
649,091 + OH686_03095 0.50 -0.0
649,091 + OH686_03095 0.50 +2.3
649,092 - OH686_03095 0.51 -2.3
649,092 - OH686_03095 0.51 +0.0
649,092 - OH686_03095 0.51 -0.1
649,092 - OH686_03095 0.51 +0.6
649,092 - OH686_03095 0.51 +0.1
649,260 + -0.3
649,261 - -1.3
649,261 - +0.2
649,261 - -0.9
649,261 - -0.5
649,270 + +0.8
649,270 + +0.5
649,270 + -0.3
649,270 + -1.1
649,270 + -1.2
649,270 + -0.8
649,270 + -1.3
649,270 + -0.3
649,270 + +0.1
649,271 - +0.3
649,271 - -0.4
649,271 - -0.2
649,271 - -0.0
649,271 - +1.0
649,271 - -0.3
649,271 - +0.0
649,271 - -1.5
649,271 - +0.6
649,271 - +0.2
649,271 - -0.7
649,274 + -0.8
649,274 + -0.0
649,274 + -1.8
649,274 + +1.1
649,274 + +0.1
649,275 - +0.3
649,275 - +0.1
649,275 - +0.2
649,302 + +0.1
649,302 + +1.0
649,303 - -1.0
649,340 + OH686_03100 0.11 -0.7
649,340 + OH686_03100 0.11 +0.1
649,340 + OH686_03100 0.11 +0.3
649,340 + OH686_03100 0.11 +0.3
649,340 + OH686_03100 0.11 -0.0
649,341 - OH686_03100 0.11 -0.8
649,341 - OH686_03100 0.11 -0.1
649,341 - OH686_03100 0.11 -0.2
649,392 + OH686_03100 0.26 -0.1
649,392 + OH686_03100 0.26 +0.4
649,392 + OH686_03100 0.26 +0.0
649,392 + OH686_03100 0.26 +0.4
649,392 + OH686_03100 0.26 -0.3
649,392 + OH686_03100 0.26 -0.2
649,393 - OH686_03100 0.26 -1.0
649,393 - OH686_03100 0.26 +0.1
649,608 + -1.2
649,700 + OH686_03105 0.11 -0.1
649,700 + OH686_03105 0.11 -0.4
649,701 - OH686_03105 0.11 -0.8
649,701 - OH686_03105 0.11 +0.2
649,701 - OH686_03105 0.11 -0.3
649,701 - OH686_03105 0.11 -1.3
649,751 + OH686_03105 0.15 -0.4
649,752 - OH686_03105 0.15 +0.9
649,752 - OH686_03105 0.15 -0.8
649,752 - OH686_03105 0.15 +0.9
649,752 - OH686_03105 0.15 +1.3
649,796 + OH686_03105 0.18 -0.8
649,796 + OH686_03105 0.18 +0.2
649,796 + OH686_03105 0.18 +0.7
649,796 + OH686_03105 0.18 +1.1
649,796 + OH686_03105 0.18 +1.3
649,797 - OH686_03105 0.18 +0.2
649,797 - OH686_03105 0.18 -1.0
649,797 - OH686_03105 0.18 -0.4
649,933 - OH686_03105 0.28 -0.6
649,933 - OH686_03105 0.28 +1.1
650,007 + OH686_03105 0.34 +0.4
650,007 + OH686_03105 0.34 -1.5
650,007 + OH686_03105 0.34 -0.6
650,008 - OH686_03105 0.34 -0.4
650,008 - OH686_03105 0.34 -0.2
650,008 - OH686_03105 0.34 -1.0
650,008 - OH686_03105 0.34 -0.7
650,008 - OH686_03105 0.34 -0.4
650,008 - OH686_03105 0.34 -1.6
650,008 - OH686_03105 0.34 +0.7
650,008 - OH686_03105 0.34 -0.6
650,008 - OH686_03105 0.34 -2.0
650,147 + OH686_03105 0.44 -0.3
650,147 + OH686_03105 0.44 -0.2
650,147 + OH686_03105 0.44 -0.3
650,147 + OH686_03105 0.44 -0.4
650,147 + OH686_03105 0.44 -0.9
650,148 - OH686_03105 0.44 -0.4
650,225 + OH686_03105 0.50 +0.1
650,225 + OH686_03105 0.50 -0.6
650,225 + OH686_03105 0.50 +0.1
650,226 - OH686_03105 0.50 +0.3
650,226 - OH686_03105 0.50 -1.4
650,226 - OH686_03105 0.50 +0.9
650,226 - OH686_03105 0.50 -0.6
650,226 - OH686_03105 0.50 -0.6
650,252 + OH686_03105 0.52 +0.1
650,252 + OH686_03105 0.52 -1.3
650,252 + OH686_03105 0.52 -0.4
650,253 - OH686_03105 0.52 -0.4
650,402 + OH686_03105 0.63 -0.3
650,402 + OH686_03105 0.63 -0.6
650,402 + OH686_03105 0.63 -0.3
650,402 + OH686_03105 0.63 -0.4
650,402 + OH686_03105 0.63 +1.0
650,402 + OH686_03105 0.63 -1.4
650,402 + OH686_03105 0.63 -0.2
650,402 + OH686_03105 0.63 -0.8
650,402 + OH686_03105 0.63 -0.4
650,403 - OH686_03105 0.63 +0.6
650,403 - OH686_03105 0.63 +0.5
650,403 - OH686_03105 0.63 -1.8
650,403 - OH686_03105 0.63 +0.2
650,403 - OH686_03105 0.63 -0.1
650,403 - OH686_03105 0.63 -1.1
650,403 - OH686_03105 0.63 +0.5
650,403 - OH686_03105 0.63 +0.1
650,403 - OH686_03105 0.63 -1.0
650,403 - OH686_03105 0.63 -2.0
650,403 - OH686_03105 0.63 -0.2
650,403 - OH686_03105 0.63 +0.6
650,403 - OH686_03105 0.63 +0.1
650,403 - OH686_03105 0.63 -0.5
650,403 - OH686_03105 0.63 -0.2
650,403 - OH686_03105 0.63 -0.8
650,403 - OH686_03105 0.63 +0.2
650,403 - OH686_03105 0.63 -0.3
650,408 - OH686_03105 0.64 +0.0
650,408 - OH686_03105 0.64 -0.2
650,408 - OH686_03105 0.64 +0.3
650,408 - OH686_03105 0.64 +0.3
650,408 - OH686_03105 0.64 -1.6
650,408 - OH686_03105 0.64 -0.1
650,636 + OH686_03105 0.81 +0.5
650,636 + OH686_03105 0.81 -0.3
650,636 + OH686_03105 0.81 -0.0
650,637 - OH686_03105 0.81 +0.3
650,879 + -0.3
650,879 + -0.7
650,879 + -0.1
650,879 + +0.1
650,879 + -0.8
650,879 + -0.0
650,879 + +0.1
650,880 - -0.2
650,880 - -0.6
650,880 - -0.1
650,880 - +0.7
650,880 - +1.3
650,880 - +0.5
650,880 - -0.3
650,933 - -0.5
651,040 - -0.0
651,093 + -1.2
651,093 + -0.8
651,093 + -0.4
651,093 + +0.7
651,093 + -0.3
651,093 + -0.3
651,094 - +0.4
651,094 - -0.9
651,094 - +0.2
651,094 - -0.4
651,225 + OH686_03110 0.13 -0.3
651,226 - OH686_03110 0.13 -0.0
651,330 + OH686_03110 0.18 -0.7
651,330 + OH686_03110 0.18 +1.2
651,330 + OH686_03110 0.18 +0.0
651,330 + OH686_03110 0.18 -1.3
651,330 + OH686_03110 0.18 -0.3
651,331 - OH686_03110 0.18 +0.1
651,331 - OH686_03110 0.18 -0.2
651,331 - OH686_03110 0.18 -1.7
651,331 - OH686_03110 0.18 +0.4
651,331 - OH686_03110 0.18 +0.3
651,331 - OH686_03110 0.18 +0.6
651,331 - OH686_03110 0.18 -0.6
651,331 - OH686_03110 0.18 -0.2
651,331 - OH686_03110 0.18 -0.6
651,405 + OH686_03110 0.21 +0.1
651,405 + OH686_03110 0.21 +0.1
651,405 + OH686_03110 0.21 +0.1
651,405 + OH686_03110 0.21 +0.5
651,405 + OH686_03110 0.21 +0.2
651,405 + OH686_03110 0.21 -1.1
651,405 + OH686_03110 0.21 +0.9
651,405 + OH686_03110 0.21 -0.3
651,406 - OH686_03110 0.21 -0.5
651,406 - OH686_03110 0.21 -0.0
651,406 - OH686_03110 0.21 -0.4
651,406 - OH686_03110 0.21 +0.1
651,406 - OH686_03110 0.21 -0.4
651,499 - OH686_03110 0.25 -1.4
651,576 + OH686_03110 0.29 -0.9
651,576 + OH686_03110 0.29 -0.8
651,577 - OH686_03110 0.29 -0.1
651,577 - OH686_03110 0.29 +0.2
651,577 - OH686_03110 0.29 +0.3
651,633 - OH686_03110 0.31 +0.6
651,717 + OH686_03110 0.35 +0.0
651,717 + OH686_03110 0.35 +0.7
651,717 + OH686_03110 0.35 -0.4
651,744 + OH686_03110 0.36 +0.0
651,746 + OH686_03110 0.37 -0.1
651,746 + OH686_03110 0.37 -0.5
651,746 + OH686_03110 0.37 -0.1
651,746 + OH686_03110 0.37 -0.3
651,747 - OH686_03110 0.37 -1.4
651,747 - OH686_03110 0.37 -0.5
651,747 - OH686_03110 0.37 -0.5
651,747 - OH686_03110 0.37 +0.6
651,747 - OH686_03110 0.37 +0.6
651,747 - OH686_03110 0.37 +0.2
651,747 - OH686_03110 0.37 +0.3
651,747 - OH686_03110 0.37 +0.3
651,747 - OH686_03110 0.37 +0.2
651,747 - OH686_03110 0.37 +0.2
651,747 - OH686_03110 0.37 +2.0
651,766 - OH686_03110 0.37 +0.2
651,766 - OH686_03110 0.37 -0.9
651,786 + OH686_03110 0.38 +0.9
651,786 + OH686_03110 0.38 +0.3
651,786 + OH686_03110 0.38 +1.6
651,786 + OH686_03110 0.38 -1.6
651,786 + OH686_03110 0.38 +0.2
651,787 - OH686_03110 0.38 -0.3
651,787 - OH686_03110 0.38 -0.1
651,796 - OH686_03110 0.39 +0.1

Or see this region's nucleotide sequence