Experiment: m.b. Chlorite 0.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4327 and Echvi_4328 are separated by 138 nucleotides Echvi_4328 and Echvi_4329 are separated by 23 nucleotides Echvi_4329 and Echvi_4330 are separated by 46 nucleotides
Echvi_4327: Echvi_4327 - RNA polymerase sigma-70 factor, Bacteroides expansion family 1, at 5,172,793 to 5,173,344
_4327
Echvi_4328: Echvi_4328 - hypothetical protein, at 5,173,483 to 5,174,100
_4328
Echvi_4329: Echvi_4329 - Outer membrane receptor proteins, mostly Fe transport, at 5,174,124 to 5,176,478
_4329
Echvi_4330: Echvi_4330 - hypothetical protein, at 5,176,525 to 5,177,778
_4330
Position (kb) 5174
5175
5176
5177 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5173.449 kb on + strand at 5173.451 kb on + strand at 5173.451 kb on + strand at 5173.452 kb on - strand at 5173.513 kb on + strand at 5173.514 kb on - strand at 5173.515 kb on + strand at 5173.631 kb on + strand, within Echvi_4328 at 5173.778 kb on + strand, within Echvi_4328 at 5173.827 kb on + strand, within Echvi_4328 at 5173.828 kb on - strand, within Echvi_4328 at 5173.828 kb on - strand, within Echvi_4328 at 5173.828 kb on - strand, within Echvi_4328 at 5173.915 kb on + strand, within Echvi_4328 at 5173.916 kb on - strand, within Echvi_4328 at 5173.990 kb on + strand, within Echvi_4328 at 5173.991 kb on - strand, within Echvi_4328 at 5173.991 kb on - strand, within Echvi_4328 at 5173.993 kb on + strand, within Echvi_4328 at 5173.994 kb on - strand, within Echvi_4328 at 5174.001 kb on + strand, within Echvi_4328 at 5174.057 kb on - strand at 5174.085 kb on + strand at 5174.086 kb on - strand at 5174.088 kb on + strand at 5174.088 kb on + strand at 5174.088 kb on + strand at 5174.089 kb on - strand at 5174.089 kb on - strand at 5174.090 kb on + strand at 5174.134 kb on + strand at 5174.401 kb on - strand, within Echvi_4329 at 5174.401 kb on - strand, within Echvi_4329 at 5174.654 kb on + strand, within Echvi_4329 at 5174.704 kb on + strand, within Echvi_4329 at 5174.730 kb on + strand, within Echvi_4329 at 5174.733 kb on - strand, within Echvi_4329 at 5174.832 kb on + strand, within Echvi_4329 at 5174.925 kb on + strand, within Echvi_4329 at 5174.925 kb on + strand, within Echvi_4329 at 5174.925 kb on + strand, within Echvi_4329 at 5174.925 kb on + strand, within Echvi_4329 at 5174.926 kb on - strand, within Echvi_4329 at 5174.926 kb on - strand, within Echvi_4329 at 5174.926 kb on - strand, within Echvi_4329 at 5174.926 kb on - strand, within Echvi_4329 at 5174.926 kb on - strand, within Echvi_4329 at 5174.946 kb on + strand, within Echvi_4329 at 5175.248 kb on + strand, within Echvi_4329 at 5175.248 kb on + strand, within Echvi_4329 at 5175.252 kb on + strand, within Echvi_4329 at 5175.291 kb on + strand, within Echvi_4329 at 5175.291 kb on + strand, within Echvi_4329 at 5175.292 kb on - strand, within Echvi_4329 at 5175.292 kb on - strand, within Echvi_4329 at 5175.292 kb on - strand, within Echvi_4329 at 5175.292 kb on - strand, within Echvi_4329 at 5175.292 kb on - strand, within Echvi_4329 at 5175.293 kb on + strand, within Echvi_4329 at 5175.293 kb on + strand, within Echvi_4329 at 5175.293 kb on + strand, within Echvi_4329 at 5175.383 kb on - strand, within Echvi_4329 at 5175.400 kb on - strand, within Echvi_4329 at 5175.400 kb on - strand, within Echvi_4329 at 5175.468 kb on + strand, within Echvi_4329 at 5175.468 kb on + strand, within Echvi_4329 at 5175.469 kb on - strand, within Echvi_4329 at 5175.469 kb on - strand, within Echvi_4329 at 5175.469 kb on - strand, within Echvi_4329 at 5175.469 kb on - strand, within Echvi_4329 at 5175.536 kb on - strand, within Echvi_4329 at 5175.536 kb on - strand, within Echvi_4329 at 5175.548 kb on + strand, within Echvi_4329 at 5175.548 kb on + strand, within Echvi_4329 at 5175.625 kb on - strand, within Echvi_4329 at 5175.812 kb on + strand, within Echvi_4329 at 5175.813 kb on - strand, within Echvi_4329 at 5175.833 kb on - strand, within Echvi_4329 at 5175.953 kb on + strand, within Echvi_4329 at 5175.953 kb on + strand, within Echvi_4329 at 5176.015 kb on + strand, within Echvi_4329 at 5176.015 kb on + strand, within Echvi_4329 at 5176.159 kb on - strand, within Echvi_4329 at 5176.172 kb on + strand, within Echvi_4329 at 5176.173 kb on - strand, within Echvi_4329 at 5176.180 kb on + strand, within Echvi_4329 at 5176.180 kb on + strand, within Echvi_4329 at 5176.180 kb on + strand, within Echvi_4329 at 5176.180 kb on + strand, within Echvi_4329 at 5176.181 kb on - strand, within Echvi_4329 at 5176.181 kb on - strand, within Echvi_4329 at 5176.181 kb on - strand, within Echvi_4329 at 5176.181 kb on - strand, within Echvi_4329 at 5176.181 kb on - strand, within Echvi_4329 at 5176.185 kb on + strand, within Echvi_4329 at 5176.250 kb on - strand at 5176.250 kb on - strand at 5176.260 kb on + strand at 5176.342 kb on - strand at 5176.413 kb on + strand at 5176.452 kb on + strand at 5176.453 kb on - strand at 5176.503 kb on + strand at 5176.503 kb on + strand at 5176.504 kb on - strand at 5176.504 kb on - strand at 5176.504 kb on - strand at 5176.508 kb on - strand at 5176.508 kb on - strand at 5176.509 kb on + strand at 5176.516 kb on + strand at 5176.677 kb on - strand, within Echvi_4330 at 5176.715 kb on - strand, within Echvi_4330 at 5176.715 kb on - strand, within Echvi_4330 at 5176.717 kb on - strand, within Echvi_4330 at 5176.942 kb on - strand, within Echvi_4330 at 5176.944 kb on + strand, within Echvi_4330 at 5176.944 kb on + strand, within Echvi_4330 at 5176.963 kb on - strand, within Echvi_4330 at 5176.970 kb on - strand, within Echvi_4330 at 5176.981 kb on + strand, within Echvi_4330 at 5176.982 kb on - strand, within Echvi_4330 at 5176.982 kb on - strand, within Echvi_4330 at 5176.984 kb on - strand, within Echvi_4330 at 5176.984 kb on - strand, within Echvi_4330 at 5177.128 kb on + strand, within Echvi_4330 at 5177.129 kb on - strand, within Echvi_4330 at 5177.129 kb on - strand, within Echvi_4330 at 5177.130 kb on + strand, within Echvi_4330 at 5177.130 kb on + strand, within Echvi_4330 at 5177.167 kb on + strand, within Echvi_4330 at 5177.225 kb on - strand, within Echvi_4330 at 5177.302 kb on + strand, within Echvi_4330 at 5177.303 kb on - strand, within Echvi_4330 at 5177.303 kb on - strand, within Echvi_4330 at 5177.357 kb on + strand, within Echvi_4330 at 5177.407 kb on + strand, within Echvi_4330 at 5177.407 kb on + strand, within Echvi_4330 at 5177.407 kb on + strand, within Echvi_4330 at 5177.428 kb on + strand, within Echvi_4330 at 5177.431 kb on - strand, within Echvi_4330 at 5177.431 kb on - strand, within Echvi_4330 at 5177.477 kb on - strand, within Echvi_4330 at 5177.477 kb on - strand, within Echvi_4330 at 5177.477 kb on - strand, within Echvi_4330 at 5177.477 kb on - strand, within Echvi_4330
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.15 mM remove 5,173,449 + +0.4 5,173,451 + -1.9 5,173,451 + -0.4 5,173,452 - -0.1 5,173,513 + -2.4 5,173,514 - -1.0 5,173,515 + -1.8 5,173,631 + Echvi_4328 0.24 -1.2 5,173,778 + Echvi_4328 0.48 -1.2 5,173,827 + Echvi_4328 0.56 -1.9 5,173,828 - Echvi_4328 0.56 -2.0 5,173,828 - Echvi_4328 0.56 +0.0 5,173,828 - Echvi_4328 0.56 +0.5 5,173,915 + Echvi_4328 0.70 -2.9 5,173,916 - Echvi_4328 0.70 -0.1 5,173,990 + Echvi_4328 0.82 -1.3 5,173,991 - Echvi_4328 0.82 -0.0 5,173,991 - Echvi_4328 0.82 -1.1 5,173,993 + Echvi_4328 0.83 -0.3 5,173,994 - Echvi_4328 0.83 -1.6 5,174,001 + Echvi_4328 0.84 -2.4 5,174,057 - -0.9 5,174,085 + -1.1 5,174,086 - +0.0 5,174,088 + -2.0 5,174,088 + -0.7 5,174,088 + -2.1 5,174,089 - -0.0 5,174,089 - +0.4 5,174,090 + -0.2 5,174,134 + -0.6 5,174,401 - Echvi_4329 0.12 +0.7 5,174,401 - Echvi_4329 0.12 -1.3 5,174,654 + Echvi_4329 0.23 -1.4 5,174,704 + Echvi_4329 0.25 -0.0 5,174,730 + Echvi_4329 0.26 -1.0 5,174,733 - Echvi_4329 0.26 -0.1 5,174,832 + Echvi_4329 0.30 -2.4 5,174,925 + Echvi_4329 0.34 -0.2 5,174,925 + Echvi_4329 0.34 +0.3 5,174,925 + Echvi_4329 0.34 +0.5 5,174,925 + Echvi_4329 0.34 -0.2 5,174,926 - Echvi_4329 0.34 -2.2 5,174,926 - Echvi_4329 0.34 -0.1 5,174,926 - Echvi_4329 0.34 -0.3 5,174,926 - Echvi_4329 0.34 -0.2 5,174,926 - Echvi_4329 0.34 -0.4 5,174,946 + Echvi_4329 0.35 -0.2 5,175,248 + Echvi_4329 0.48 +0.6 5,175,248 + Echvi_4329 0.48 -0.6 5,175,252 + Echvi_4329 0.48 -1.9 5,175,291 + Echvi_4329 0.50 +0.7 5,175,291 + Echvi_4329 0.50 -0.4 5,175,292 - Echvi_4329 0.50 -1.0 5,175,292 - Echvi_4329 0.50 -1.3 5,175,292 - Echvi_4329 0.50 -0.4 5,175,292 - Echvi_4329 0.50 -0.3 5,175,292 - Echvi_4329 0.50 -0.7 5,175,293 + Echvi_4329 0.50 -0.4 5,175,293 + Echvi_4329 0.50 -0.8 5,175,293 + Echvi_4329 0.50 -0.2 5,175,383 - Echvi_4329 0.53 -1.3 5,175,400 - Echvi_4329 0.54 +0.3 5,175,400 - Echvi_4329 0.54 -0.8 5,175,468 + Echvi_4329 0.57 -1.8 5,175,468 + Echvi_4329 0.57 -0.8 5,175,469 - Echvi_4329 0.57 +0.0 5,175,469 - Echvi_4329 0.57 -0.2 5,175,469 - Echvi_4329 0.57 +0.6 5,175,469 - Echvi_4329 0.57 -0.3 5,175,536 - Echvi_4329 0.60 +0.6 5,175,536 - Echvi_4329 0.60 -0.1 5,175,548 + Echvi_4329 0.60 -1.9 5,175,548 + Echvi_4329 0.60 -1.5 5,175,625 - Echvi_4329 0.64 -0.6 5,175,812 + Echvi_4329 0.72 -1.7 5,175,813 - Echvi_4329 0.72 -1.6 5,175,833 - Echvi_4329 0.73 -1.7 5,175,953 + Echvi_4329 0.78 -1.0 5,175,953 + Echvi_4329 0.78 -1.3 5,176,015 + Echvi_4329 0.80 -1.0 5,176,015 + Echvi_4329 0.80 -0.3 5,176,159 - Echvi_4329 0.86 -0.1 5,176,172 + Echvi_4329 0.87 -2.1 5,176,173 - Echvi_4329 0.87 +0.2 5,176,180 + Echvi_4329 0.87 -1.1 5,176,180 + Echvi_4329 0.87 -0.7 5,176,180 + Echvi_4329 0.87 -2.6 5,176,180 + Echvi_4329 0.87 -2.9 5,176,181 - Echvi_4329 0.87 +1.0 5,176,181 - Echvi_4329 0.87 -1.1 5,176,181 - Echvi_4329 0.87 -0.4 5,176,181 - Echvi_4329 0.87 +1.0 5,176,181 - Echvi_4329 0.87 -0.6 5,176,185 + Echvi_4329 0.88 -1.0 5,176,250 - -0.6 5,176,250 - -0.7 5,176,260 + -0.1 5,176,342 - -0.3 5,176,413 + -1.8 5,176,452 + -0.9 5,176,453 - +0.4 5,176,503 + -0.9 5,176,503 + +0.4 5,176,504 - +0.1 5,176,504 - +0.2 5,176,504 - -1.1 5,176,508 - -0.1 5,176,508 - -0.3 5,176,509 + -1.6 5,176,516 + -1.4 5,176,677 - Echvi_4330 0.12 -0.8 5,176,715 - Echvi_4330 0.15 -0.8 5,176,715 - Echvi_4330 0.15 -0.2 5,176,717 - Echvi_4330 0.15 +0.3 5,176,942 - Echvi_4330 0.33 -0.6 5,176,944 + Echvi_4330 0.33 -1.5 5,176,944 + Echvi_4330 0.33 -0.4 5,176,963 - Echvi_4330 0.35 -0.1 5,176,970 - Echvi_4330 0.35 -0.4 5,176,981 + Echvi_4330 0.36 -0.7 5,176,982 - Echvi_4330 0.36 +0.5 5,176,982 - Echvi_4330 0.36 +1.1 5,176,984 - Echvi_4330 0.37 -0.6 5,176,984 - Echvi_4330 0.37 +0.9 5,177,128 + Echvi_4330 0.48 -1.3 5,177,129 - Echvi_4330 0.48 -0.2 5,177,129 - Echvi_4330 0.48 -1.4 5,177,130 + Echvi_4330 0.48 -0.5 5,177,130 + Echvi_4330 0.48 +0.4 5,177,167 + Echvi_4330 0.51 -2.5 5,177,225 - Echvi_4330 0.56 +0.5 5,177,302 + Echvi_4330 0.62 -0.1 5,177,303 - Echvi_4330 0.62 -0.3 5,177,303 - Echvi_4330 0.62 +0.7 5,177,357 + Echvi_4330 0.66 -2.0 5,177,407 + Echvi_4330 0.70 +1.1 5,177,407 + Echvi_4330 0.70 -1.1 5,177,407 + Echvi_4330 0.70 -0.3 5,177,428 + Echvi_4330 0.72 -0.5 5,177,431 - Echvi_4330 0.72 -1.3 5,177,431 - Echvi_4330 0.72 -0.5 5,177,477 - Echvi_4330 0.76 -0.2 5,177,477 - Echvi_4330 0.76 -1.4 5,177,477 - Echvi_4330 0.76 -0.7 5,177,477 - Echvi_4330 0.76 +0.1
Or see this region's nucleotide sequence