Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3463

Experiment: m.b. Chlorite 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3461 and Echvi_3462 are separated by 111 nucleotidesEchvi_3462 and Echvi_3463 are separated by 55 nucleotidesEchvi_3463 and Echvi_3464 are separated by 18 nucleotidesEchvi_3464 and Echvi_3465 are separated by 2 nucleotides Echvi_3461: Echvi_3461 - hypothetical protein, at 4,096,905 to 4,101,266 _3461 Echvi_3462: Echvi_3462 - hypothetical protein, at 4,101,378 to 4,101,992 _3462 Echvi_3463: Echvi_3463 - hypothetical protein, at 4,102,048 to 4,102,593 _3463 Echvi_3464: Echvi_3464 - OmpW family., at 4,102,612 to 4,103,217 _3464 Echvi_3465: Echvi_3465 - hypothetical protein, at 4,103,220 to 4,103,897 _3465 Position (kb) 4102 4103Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4101.098 kb on + strandat 4101.098 kb on + strandat 4101.098 kb on + strandat 4101.112 kb on + strandat 4101.112 kb on + strandat 4101.119 kb on + strandat 4101.120 kb on - strandat 4101.129 kb on - strandat 4101.139 kb on + strandat 4101.140 kb on - strandat 4101.143 kb on + strandat 4101.143 kb on + strandat 4101.143 kb on + strandat 4101.167 kb on - strandat 4101.293 kb on - strandat 4101.295 kb on + strandat 4101.427 kb on + strandat 4101.450 kb on + strand, within Echvi_3462at 4101.450 kb on + strand, within Echvi_3462at 4101.489 kb on + strand, within Echvi_3462at 4101.504 kb on + strand, within Echvi_3462at 4101.550 kb on + strand, within Echvi_3462at 4101.550 kb on + strand, within Echvi_3462at 4101.550 kb on + strand, within Echvi_3462at 4101.550 kb on + strand, within Echvi_3462at 4101.550 kb on + strand, within Echvi_3462at 4101.551 kb on - strand, within Echvi_3462at 4101.551 kb on - strand, within Echvi_3462at 4101.551 kb on - strand, within Echvi_3462at 4101.557 kb on + strand, within Echvi_3462at 4101.558 kb on - strand, within Echvi_3462at 4101.569 kb on - strand, within Echvi_3462at 4101.571 kb on + strand, within Echvi_3462at 4101.572 kb on - strand, within Echvi_3462at 4101.583 kb on + strand, within Echvi_3462at 4101.584 kb on - strand, within Echvi_3462at 4101.584 kb on - strand, within Echvi_3462at 4101.584 kb on - strand, within Echvi_3462at 4101.586 kb on + strand, within Echvi_3462at 4101.613 kb on + strand, within Echvi_3462at 4101.613 kb on + strand, within Echvi_3462at 4101.617 kb on - strand, within Echvi_3462at 4101.634 kb on + strand, within Echvi_3462at 4101.643 kb on + strand, within Echvi_3462at 4101.643 kb on + strand, within Echvi_3462at 4101.734 kb on + strand, within Echvi_3462at 4101.752 kb on + strand, within Echvi_3462at 4101.753 kb on - strand, within Echvi_3462at 4101.782 kb on - strand, within Echvi_3462at 4101.805 kb on - strand, within Echvi_3462at 4101.813 kb on + strand, within Echvi_3462at 4101.818 kb on + strand, within Echvi_3462at 4101.819 kb on - strand, within Echvi_3462at 4101.819 kb on - strand, within Echvi_3462at 4101.900 kb on + strand, within Echvi_3462at 4101.900 kb on + strand, within Echvi_3462at 4101.901 kb on - strand, within Echvi_3462at 4101.924 kb on + strand, within Echvi_3462at 4101.925 kb on - strand, within Echvi_3462at 4101.925 kb on - strand, within Echvi_3462at 4101.925 kb on - strand, within Echvi_3462at 4102.006 kb on + strandat 4102.015 kb on - strandat 4102.015 kb on - strandat 4102.049 kb on + strandat 4102.049 kb on + strandat 4102.050 kb on - strandat 4102.050 kb on - strandat 4102.050 kb on - strandat 4102.050 kb on - strandat 4102.055 kb on - strandat 4102.063 kb on - strandat 4102.125 kb on + strand, within Echvi_3463at 4102.185 kb on + strand, within Echvi_3463at 4102.186 kb on - strand, within Echvi_3463at 4102.201 kb on - strand, within Echvi_3463at 4102.201 kb on - strand, within Echvi_3463at 4102.202 kb on + strand, within Echvi_3463at 4102.203 kb on - strand, within Echvi_3463at 4102.203 kb on - strand, within Echvi_3463at 4102.256 kb on + strand, within Echvi_3463at 4102.256 kb on + strand, within Echvi_3463at 4102.257 kb on - strand, within Echvi_3463at 4102.257 kb on - strand, within Echvi_3463at 4102.323 kb on + strand, within Echvi_3463at 4102.458 kb on - strand, within Echvi_3463at 4102.564 kb on + strandat 4102.565 kb on - strandat 4102.565 kb on - strandat 4102.569 kb on + strandat 4102.569 kb on + strandat 4102.569 kb on + strandat 4102.569 kb on + strandat 4102.570 kb on - strandat 4102.570 kb on - strandat 4102.570 kb on - strandat 4102.571 kb on + strandat 4102.571 kb on + strandat 4102.571 kb on + strandat 4102.571 kb on + strandat 4102.571 kb on + strandat 4102.571 kb on + strandat 4102.571 kb on + strandat 4102.572 kb on - strandat 4102.572 kb on - strandat 4102.572 kb on - strandat 4102.572 kb on - strandat 4102.572 kb on - strandat 4102.572 kb on - strandat 4102.572 kb on - strandat 4102.572 kb on - strandat 4102.572 kb on - strandat 4102.577 kb on + strandat 4102.578 kb on - strandat 4102.596 kb on + strandat 4102.597 kb on - strandat 4102.597 kb on - strandat 4102.638 kb on + strandat 4102.639 kb on - strandat 4102.683 kb on - strand, within Echvi_3464at 4102.713 kb on - strand, within Echvi_3464at 4102.782 kb on - strand, within Echvi_3464at 4102.811 kb on + strand, within Echvi_3464at 4102.811 kb on + strand, within Echvi_3464at 4102.811 kb on + strand, within Echvi_3464at 4102.811 kb on + strand, within Echvi_3464at 4102.811 kb on + strand, within Echvi_3464at 4102.811 kb on + strand, within Echvi_3464at 4102.811 kb on + strand, within Echvi_3464at 4102.812 kb on - strand, within Echvi_3464at 4102.812 kb on - strand, within Echvi_3464at 4102.812 kb on - strand, within Echvi_3464at 4102.834 kb on + strand, within Echvi_3464at 4102.834 kb on + strand, within Echvi_3464at 4102.834 kb on + strand, within Echvi_3464at 4102.835 kb on - strand, within Echvi_3464at 4102.835 kb on - strand, within Echvi_3464at 4102.835 kb on - strand, within Echvi_3464at 4102.835 kb on - strand, within Echvi_3464at 4102.835 kb on - strand, within Echvi_3464at 4102.837 kb on - strand, within Echvi_3464at 4102.838 kb on + strand, within Echvi_3464at 4102.838 kb on + strand, within Echvi_3464at 4102.838 kb on + strand, within Echvi_3464at 4102.839 kb on - strand, within Echvi_3464at 4102.846 kb on - strand, within Echvi_3464at 4102.865 kb on - strand, within Echvi_3464at 4102.865 kb on - strand, within Echvi_3464at 4102.869 kb on - strand, within Echvi_3464at 4102.872 kb on - strand, within Echvi_3464at 4102.872 kb on - strand, within Echvi_3464at 4102.872 kb on - strand, within Echvi_3464at 4102.875 kb on + strand, within Echvi_3464at 4102.875 kb on + strand, within Echvi_3464at 4102.876 kb on - strand, within Echvi_3464at 4102.876 kb on - strand, within Echvi_3464at 4102.876 kb on - strand, within Echvi_3464at 4102.901 kb on - strand, within Echvi_3464at 4102.907 kb on + strand, within Echvi_3464at 4102.907 kb on + strand, within Echvi_3464at 4102.908 kb on - strand, within Echvi_3464at 4102.908 kb on - strand, within Echvi_3464at 4102.911 kb on + strand, within Echvi_3464at 4102.911 kb on + strand, within Echvi_3464at 4102.911 kb on + strand, within Echvi_3464at 4102.913 kb on + strand, within Echvi_3464at 4102.978 kb on + strand, within Echvi_3464at 4102.978 kb on + strand, within Echvi_3464at 4102.979 kb on - strand, within Echvi_3464at 4102.988 kb on + strand, within Echvi_3464at 4102.989 kb on - strand, within Echvi_3464at 4103.010 kb on + strand, within Echvi_3464at 4103.011 kb on - strand, within Echvi_3464at 4103.011 kb on - strand, within Echvi_3464at 4103.011 kb on - strand, within Echvi_3464at 4103.027 kb on + strand, within Echvi_3464at 4103.028 kb on - strand, within Echvi_3464at 4103.048 kb on + strand, within Echvi_3464at 4103.048 kb on + strand, within Echvi_3464at 4103.048 kb on + strand, within Echvi_3464at 4103.067 kb on + strand, within Echvi_3464at 4103.085 kb on + strand, within Echvi_3464at 4103.086 kb on - strand, within Echvi_3464at 4103.087 kb on + strand, within Echvi_3464at 4103.087 kb on + strand, within Echvi_3464at 4103.088 kb on - strand, within Echvi_3464at 4103.123 kb on + strand, within Echvi_3464at 4103.124 kb on - strand, within Echvi_3464at 4103.180 kb on - strandat 4103.194 kb on - strandat 4103.221 kb on + strandat 4103.388 kb on + strand, within Echvi_3465at 4103.388 kb on + strand, within Echvi_3465at 4103.388 kb on + strand, within Echvi_3465at 4103.425 kb on + strand, within Echvi_3465at 4103.425 kb on + strand, within Echvi_3465at 4103.427 kb on + strand, within Echvi_3465at 4103.427 kb on + strand, within Echvi_3465at 4103.427 kb on + strand, within Echvi_3465at 4103.427 kb on + strand, within Echvi_3465at 4103.428 kb on - strand, within Echvi_3465at 4103.428 kb on - strand, within Echvi_3465at 4103.428 kb on - strand, within Echvi_3465at 4103.458 kb on + strand, within Echvi_3465at 4103.459 kb on - strand, within Echvi_3465at 4103.462 kb on - strand, within Echvi_3465at 4103.467 kb on + strand, within Echvi_3465at 4103.468 kb on - strand, within Echvi_3465at 4103.556 kb on - strand, within Echvi_3465at 4103.556 kb on - strand, within Echvi_3465at 4103.556 kb on - strand, within Echvi_3465at 4103.575 kb on - strand, within Echvi_3465at 4103.580 kb on + strand, within Echvi_3465at 4103.581 kb on - strand, within Echvi_3465at 4103.581 kb on - strand, within Echvi_3465

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.15 mM
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4,101,098 + +0.9
4,101,098 + -0.2
4,101,098 + +0.9
4,101,112 + +0.2
4,101,112 + -0.2
4,101,119 + +0.2
4,101,120 - +1.6
4,101,129 - -1.7
4,101,139 + -0.5
4,101,140 - -0.3
4,101,143 + -0.2
4,101,143 + +0.2
4,101,143 + +0.2
4,101,167 - +0.7
4,101,293 - -1.4
4,101,295 + +0.4
4,101,427 + -0.1
4,101,450 + Echvi_3462 0.12 +2.3
4,101,450 + Echvi_3462 0.12 -1.3
4,101,489 + Echvi_3462 0.18 -1.2
4,101,504 + Echvi_3462 0.20 -0.0
4,101,550 + Echvi_3462 0.28 +0.5
4,101,550 + Echvi_3462 0.28 -0.2
4,101,550 + Echvi_3462 0.28 +0.0
4,101,550 + Echvi_3462 0.28 -0.5
4,101,550 + Echvi_3462 0.28 -0.7
4,101,551 - Echvi_3462 0.28 +1.6
4,101,551 - Echvi_3462 0.28 -0.4
4,101,551 - Echvi_3462 0.28 -0.1
4,101,557 + Echvi_3462 0.29 -0.5
4,101,558 - Echvi_3462 0.29 +0.7
4,101,569 - Echvi_3462 0.31 +0.1
4,101,571 + Echvi_3462 0.31 -0.9
4,101,572 - Echvi_3462 0.32 +0.5
4,101,583 + Echvi_3462 0.33 -1.7
4,101,584 - Echvi_3462 0.33 -0.1
4,101,584 - Echvi_3462 0.33 -0.1
4,101,584 - Echvi_3462 0.33 -0.9
4,101,586 + Echvi_3462 0.34 +0.3
4,101,613 + Echvi_3462 0.38 +0.7
4,101,613 + Echvi_3462 0.38 +0.8
4,101,617 - Echvi_3462 0.39 +0.3
4,101,634 + Echvi_3462 0.42 +0.4
4,101,643 + Echvi_3462 0.43 -0.7
4,101,643 + Echvi_3462 0.43 -0.4
4,101,734 + Echvi_3462 0.58 -0.2
4,101,752 + Echvi_3462 0.61 -0.7
4,101,753 - Echvi_3462 0.61 +0.3
4,101,782 - Echvi_3462 0.66 +0.4
4,101,805 - Echvi_3462 0.69 -0.0
4,101,813 + Echvi_3462 0.71 -0.5
4,101,818 + Echvi_3462 0.72 +0.1
4,101,819 - Echvi_3462 0.72 +0.2
4,101,819 - Echvi_3462 0.72 +0.3
4,101,900 + Echvi_3462 0.85 +0.7
4,101,900 + Echvi_3462 0.85 +0.9
4,101,901 - Echvi_3462 0.85 -0.8
4,101,924 + Echvi_3462 0.89 +0.1
4,101,925 - Echvi_3462 0.89 -0.2
4,101,925 - Echvi_3462 0.89 -0.8
4,101,925 - Echvi_3462 0.89 -3.1
4,102,006 + +0.8
4,102,015 - -0.3
4,102,015 - -0.2
4,102,049 + +2.5
4,102,049 + +0.5
4,102,050 - -0.5
4,102,050 - +0.0
4,102,050 - +1.1
4,102,050 - +0.1
4,102,055 - -0.8
4,102,063 - +0.1
4,102,125 + Echvi_3463 0.14 +0.4
4,102,185 + Echvi_3463 0.25 -0.9
4,102,186 - Echvi_3463 0.25 -0.3
4,102,201 - Echvi_3463 0.28 -1.0
4,102,201 - Echvi_3463 0.28 +0.5
4,102,202 + Echvi_3463 0.28 -0.3
4,102,203 - Echvi_3463 0.28 -0.5
4,102,203 - Echvi_3463 0.28 -1.1
4,102,256 + Echvi_3463 0.38 -1.0
4,102,256 + Echvi_3463 0.38 -1.6
4,102,257 - Echvi_3463 0.38 -0.5
4,102,257 - Echvi_3463 0.38 -1.4
4,102,323 + Echvi_3463 0.50 +0.0
4,102,458 - Echvi_3463 0.75 -0.8
4,102,564 + -0.3
4,102,565 - +0.7
4,102,565 - +0.3
4,102,569 + +0.2
4,102,569 + +0.7
4,102,569 + -0.6
4,102,569 + +0.5
4,102,570 - -0.0
4,102,570 - -0.7
4,102,570 - -0.5
4,102,571 + -0.2
4,102,571 + -0.2
4,102,571 + -0.3
4,102,571 + -1.2
4,102,571 + -1.2
4,102,571 + -0.6
4,102,571 + +0.3
4,102,572 - -0.5
4,102,572 - -0.4
4,102,572 - +0.1
4,102,572 - +0.5
4,102,572 - -0.7
4,102,572 - -0.1
4,102,572 - -0.1
4,102,572 - +0.0
4,102,572 - +0.1
4,102,577 + -1.5
4,102,578 - +0.1
4,102,596 + -0.5
4,102,597 - +0.7
4,102,597 - +1.0
4,102,638 + -0.8
4,102,639 - +0.3
4,102,683 - Echvi_3464 0.12 -0.1
4,102,713 - Echvi_3464 0.17 +0.1
4,102,782 - Echvi_3464 0.28 +0.5
4,102,811 + Echvi_3464 0.33 -0.1
4,102,811 + Echvi_3464 0.33 +1.1
4,102,811 + Echvi_3464 0.33 -1.7
4,102,811 + Echvi_3464 0.33 -0.7
4,102,811 + Echvi_3464 0.33 -0.6
4,102,811 + Echvi_3464 0.33 -0.3
4,102,811 + Echvi_3464 0.33 -0.3
4,102,812 - Echvi_3464 0.33 -1.4
4,102,812 - Echvi_3464 0.33 -0.8
4,102,812 - Echvi_3464 0.33 -0.2
4,102,834 + Echvi_3464 0.37 +0.5
4,102,834 + Echvi_3464 0.37 +0.6
4,102,834 + Echvi_3464 0.37 +1.1
4,102,835 - Echvi_3464 0.37 -0.0
4,102,835 - Echvi_3464 0.37 -1.4
4,102,835 - Echvi_3464 0.37 -1.6
4,102,835 - Echvi_3464 0.37 -0.6
4,102,835 - Echvi_3464 0.37 -0.4
4,102,837 - Echvi_3464 0.37 -1.8
4,102,838 + Echvi_3464 0.37 -1.7
4,102,838 + Echvi_3464 0.37 -1.0
4,102,838 + Echvi_3464 0.37 -0.9
4,102,839 - Echvi_3464 0.37 +1.4
4,102,846 - Echvi_3464 0.39 +1.2
4,102,865 - Echvi_3464 0.42 -0.2
4,102,865 - Echvi_3464 0.42 +1.4
4,102,869 - Echvi_3464 0.42 -0.7
4,102,872 - Echvi_3464 0.43 -0.2
4,102,872 - Echvi_3464 0.43 -0.0
4,102,872 - Echvi_3464 0.43 -0.6
4,102,875 + Echvi_3464 0.43 -0.4
4,102,875 + Echvi_3464 0.43 -0.8
4,102,876 - Echvi_3464 0.44 -0.8
4,102,876 - Echvi_3464 0.44 -0.6
4,102,876 - Echvi_3464 0.44 -0.2
4,102,901 - Echvi_3464 0.48 +1.1
4,102,907 + Echvi_3464 0.49 +0.4
4,102,907 + Echvi_3464 0.49 +1.2
4,102,908 - Echvi_3464 0.49 +0.5
4,102,908 - Echvi_3464 0.49 +1.6
4,102,911 + Echvi_3464 0.49 -0.8
4,102,911 + Echvi_3464 0.49 -1.1
4,102,911 + Echvi_3464 0.49 -0.4
4,102,913 + Echvi_3464 0.50 +0.2
4,102,978 + Echvi_3464 0.60 -0.4
4,102,978 + Echvi_3464 0.60 +0.3
4,102,979 - Echvi_3464 0.61 +0.5
4,102,988 + Echvi_3464 0.62 -1.0
4,102,989 - Echvi_3464 0.62 +0.5
4,103,010 + Echvi_3464 0.66 -0.3
4,103,011 - Echvi_3464 0.66 -0.3
4,103,011 - Echvi_3464 0.66 -0.6
4,103,011 - Echvi_3464 0.66 -0.2
4,103,027 + Echvi_3464 0.68 -1.5
4,103,028 - Echvi_3464 0.69 -0.3
4,103,048 + Echvi_3464 0.72 -0.3
4,103,048 + Echvi_3464 0.72 -0.2
4,103,048 + Echvi_3464 0.72 +0.4
4,103,067 + Echvi_3464 0.75 -1.3
4,103,085 + Echvi_3464 0.78 -1.4
4,103,086 - Echvi_3464 0.78 +1.7
4,103,087 + Echvi_3464 0.78 -2.2
4,103,087 + Echvi_3464 0.78 -1.1
4,103,088 - Echvi_3464 0.79 +0.2
4,103,123 + Echvi_3464 0.84 +0.3
4,103,124 - Echvi_3464 0.84 -0.7
4,103,180 - -0.7
4,103,194 - -0.2
4,103,221 + +0.3
4,103,388 + Echvi_3465 0.25 -1.2
4,103,388 + Echvi_3465 0.25 +0.8
4,103,388 + Echvi_3465 0.25 -0.5
4,103,425 + Echvi_3465 0.30 -0.1
4,103,425 + Echvi_3465 0.30 +0.8
4,103,427 + Echvi_3465 0.31 -0.0
4,103,427 + Echvi_3465 0.31 +0.1
4,103,427 + Echvi_3465 0.31 +0.7
4,103,427 + Echvi_3465 0.31 -1.5
4,103,428 - Echvi_3465 0.31 +1.5
4,103,428 - Echvi_3465 0.31 -0.5
4,103,428 - Echvi_3465 0.31 -2.2
4,103,458 + Echvi_3465 0.35 -1.4
4,103,459 - Echvi_3465 0.35 +1.6
4,103,462 - Echvi_3465 0.36 -0.9
4,103,467 + Echvi_3465 0.36 +0.8
4,103,468 - Echvi_3465 0.37 -1.0
4,103,556 - Echvi_3465 0.50 -0.5
4,103,556 - Echvi_3465 0.50 -0.0
4,103,556 - Echvi_3465 0.50 +0.9
4,103,575 - Echvi_3465 0.52 -0.4
4,103,580 + Echvi_3465 0.53 +1.3
4,103,581 - Echvi_3465 0.53 -0.4
4,103,581 - Echvi_3465 0.53 -0.7

Or see this region's nucleotide sequence