Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4504 and EX28DRAFT_4505 overlap by 4 nucleotides EX28DRAFT_4505 and EX28DRAFT_4506 are separated by 170 nucleotides EX28DRAFT_4506 and EX28DRAFT_4507 are separated by 42 nucleotides EX28DRAFT_4507 and EX28DRAFT_4508 are separated by 39 nucleotides EX28DRAFT_4508 and EX28DRAFT_4509 are separated by 0 nucleotides
EX28DRAFT_4504: EX28DRAFT_4504 - Mg-dependent DNase, at 70,311 to 71,093
_4504
EX28DRAFT_4505: EX28DRAFT_4505 - transcription elongation factor/antiterminator RfaH, at 71,090 to 71,581
_4505
EX28DRAFT_4506: EX28DRAFT_4506 - UbiD family decarboxylase, at 71,752 to 73,245
_4506
EX28DRAFT_4507: EX28DRAFT_4507 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases, at 73,288 to 73,989
_4507
EX28DRAFT_4508: EX28DRAFT_4508 - hypothetical protein, at 74,029 to 74,172
_4508
EX28DRAFT_4509: EX28DRAFT_4509 - fatty oxidation complex, beta subunit FadA, at 74,173 to 75,336
_4509
Position (kb)
71
72
73
74 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 70.818 kb on + strand, within EX28DRAFT_4504 at 70.927 kb on - strand, within EX28DRAFT_4504 at 70.944 kb on - strand, within EX28DRAFT_4504 at 70.983 kb on + strand, within EX28DRAFT_4504 at 71.092 kb on - strand at 71.116 kb on + strand at 71.130 kb on - strand at 71.161 kb on + strand, within EX28DRAFT_4505 at 71.162 kb on - strand, within EX28DRAFT_4505 at 71.162 kb on - strand, within EX28DRAFT_4505 at 71.225 kb on - strand, within EX28DRAFT_4505 at 71.286 kb on + strand, within EX28DRAFT_4505 at 71.286 kb on + strand, within EX28DRAFT_4505 at 71.422 kb on - strand, within EX28DRAFT_4505 at 71.565 kb on - strand at 71.569 kb on - strand at 71.581 kb on + strand at 71.581 kb on + strand at 71.582 kb on - strand at 71.582 kb on - strand at 71.647 kb on + strand at 71.648 kb on - strand at 71.650 kb on - strand at 71.727 kb on - strand at 73.237 kb on - strand at 73.255 kb on + strand at 73.264 kb on + strand at 73.264 kb on + strand at 73.264 kb on + strand at 73.264 kb on + strand at 73.265 kb on - strand at 73.340 kb on + strand at 73.340 kb on + strand at 73.340 kb on + strand at 73.340 kb on + strand at 73.340 kb on + strand at 73.340 kb on + strand at 73.758 kb on - strand, within EX28DRAFT_4507 at 73.883 kb on - strand, within EX28DRAFT_4507 at 73.883 kb on - strand, within EX28DRAFT_4507 at 73.883 kb on - strand, within EX28DRAFT_4507 at 73.988 kb on - strand at 74.030 kb on + strand at 74.030 kb on + strand at 74.103 kb on + strand, within EX28DRAFT_4508 at 74.104 kb on - strand, within EX28DRAFT_4508 at 74.104 kb on - strand, within EX28DRAFT_4508 at 74.174 kb on + strand at 74.175 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 70,818 + EX28DRAFT_4504 0.65 +0.5 70,927 - EX28DRAFT_4504 0.79 -0.4 70,944 - EX28DRAFT_4504 0.81 -0.8 70,983 + EX28DRAFT_4504 0.86 +0.2 71,092 - -0.3 71,116 + +0.5 71,130 - -0.8 71,161 + EX28DRAFT_4505 0.14 +0.3 71,162 - EX28DRAFT_4505 0.15 +2.7 71,162 - EX28DRAFT_4505 0.15 -0.8 71,225 - EX28DRAFT_4505 0.27 +0.2 71,286 + EX28DRAFT_4505 0.40 -0.9 71,286 + EX28DRAFT_4505 0.40 +1.0 71,422 - EX28DRAFT_4505 0.67 +0.7 71,565 - +1.0 71,569 - -0.5 71,581 + +0.7 71,581 + +0.1 71,582 - -0.2 71,582 - +0.7 71,647 + -0.3 71,648 - -0.4 71,650 - +1.1 71,727 - -2.3 73,237 - -0.4 73,255 + +1.2 73,264 + +0.2 73,264 + +1.4 73,264 + +0.3 73,264 + -1.1 73,265 - -0.8 73,340 + -0.9 73,340 + +0.8 73,340 + -1.9 73,340 + -1.5 73,340 + -3.4 73,340 + -0.2 73,758 - EX28DRAFT_4507 0.67 -1.4 73,883 - EX28DRAFT_4507 0.85 -3.1 73,883 - EX28DRAFT_4507 0.85 -0.7 73,883 - EX28DRAFT_4507 0.85 -2.1 73,988 - -0.5 74,030 + -0.2 74,030 + +0.8 74,103 + EX28DRAFT_4508 0.51 +0.1 74,104 - EX28DRAFT_4508 0.52 +0.1 74,104 - EX28DRAFT_4508 0.52 +0.1 74,174 + +0.5 74,175 - +0.6
Or see this region's nucleotide sequence