Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4393 and EX28DRAFT_4394 are separated by 48 nucleotides EX28DRAFT_4394 and EX28DRAFT_4395 are separated by 111 nucleotides EX28DRAFT_4395 and EX28DRAFT_4396 are separated by 112 nucleotides EX28DRAFT_4396 and EX28DRAFT_4397 are separated by 0 nucleotides
EX28DRAFT_4393: EX28DRAFT_4393 - Di- and tricarboxylate transporters, at 56,150 to 57,454
_4393
EX28DRAFT_4394: EX28DRAFT_4394 - triosephosphate isomerase (EC 5.3.1.1), at 57,503 to 58,270
_4394
EX28DRAFT_4395: EX28DRAFT_4395 - Protein of unknown function (DUF1454), at 58,382 to 58,978
_4395
EX28DRAFT_4396: EX28DRAFT_4396 - Predicted membrane protein, at 59,091 to 59,510
_4396
EX28DRAFT_4397: EX28DRAFT_4397 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 59,511 to 60,257
_4397
Position (kb)
58
59 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 57.398 kb on + strand at 57.398 kb on + strand at 57.398 kb on + strand at 57.398 kb on + strand at 57.399 kb on - strand at 57.399 kb on - strand at 57.423 kb on - strand at 57.441 kb on + strand at 57.441 kb on + strand at 57.453 kb on - strand at 57.464 kb on - strand at 57.505 kb on - strand at 58.409 kb on + strand at 58.501 kb on - strand, within EX28DRAFT_4395 at 58.501 kb on - strand, within EX28DRAFT_4395 at 58.576 kb on + strand, within EX28DRAFT_4395 at 58.602 kb on + strand, within EX28DRAFT_4395 at 58.603 kb on - strand, within EX28DRAFT_4395 at 58.603 kb on - strand, within EX28DRAFT_4395 at 58.706 kb on - strand, within EX28DRAFT_4395 at 59.012 kb on - strand at 59.070 kb on + strand at 59.070 kb on + strand at 59.071 kb on - strand at 59.078 kb on + strand at 59.078 kb on + strand at 59.078 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.088 kb on + strand at 59.089 kb on - strand at 59.089 kb on - strand at 59.089 kb on - strand at 59.089 kb on - strand at 59.098 kb on + strand at 59.098 kb on + strand at 59.098 kb on + strand at 59.099 kb on - strand at 59.099 kb on - strand at 59.202 kb on + strand, within EX28DRAFT_4396 at 59.202 kb on + strand, within EX28DRAFT_4396 at 59.203 kb on - strand, within EX28DRAFT_4396 at 59.203 kb on - strand, within EX28DRAFT_4396 at 59.278 kb on + strand, within EX28DRAFT_4396 at 59.327 kb on + strand, within EX28DRAFT_4396 at 59.328 kb on - strand, within EX28DRAFT_4396 at 59.476 kb on - strand at 59.519 kb on - strand at 59.535 kb on - strand at 59.694 kb on + strand, within EX28DRAFT_4397 at 59.807 kb on - strand, within EX28DRAFT_4397 at 59.807 kb on - strand, within EX28DRAFT_4397 at 59.889 kb on - strand, within EX28DRAFT_4397 at 59.896 kb on + strand, within EX28DRAFT_4397 at 59.897 kb on - strand, within EX28DRAFT_4397
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 57,398 + +0.4 57,398 + -1.7 57,398 + -0.4 57,398 + +0.0 57,399 - +0.2 57,399 - -0.4 57,423 - +0.3 57,441 + +0.1 57,441 + -0.0 57,453 - +0.2 57,464 - -0.2 57,505 - -0.2 58,409 + +0.3 58,501 - EX28DRAFT_4395 0.20 -0.2 58,501 - EX28DRAFT_4395 0.20 -0.4 58,576 + EX28DRAFT_4395 0.32 +0.2 58,602 + EX28DRAFT_4395 0.37 -0.2 58,603 - EX28DRAFT_4395 0.37 +0.6 58,603 - EX28DRAFT_4395 0.37 -0.2 58,706 - EX28DRAFT_4395 0.54 -0.1 59,012 - +0.1 59,070 + -0.0 59,070 + +0.2 59,071 - -0.1 59,078 + +0.0 59,078 + +0.3 59,078 + +0.1 59,088 + +0.7 59,088 + -0.2 59,088 + -0.1 59,088 + +0.6 59,088 + +0.2 59,088 + -0.2 59,088 + +0.4 59,089 - -0.1 59,089 - -0.0 59,089 - +0.7 59,089 - -0.2 59,098 + +1.0 59,098 + -0.1 59,098 + -0.2 59,099 - +0.0 59,099 - +0.1 59,202 + EX28DRAFT_4396 0.26 +2.2 59,202 + EX28DRAFT_4396 0.26 -0.2 59,203 - EX28DRAFT_4396 0.27 +0.1 59,203 - EX28DRAFT_4396 0.27 -0.1 59,278 + EX28DRAFT_4396 0.45 +0.1 59,327 + EX28DRAFT_4396 0.56 +0.1 59,328 - EX28DRAFT_4396 0.56 +0.7 59,476 - +0.7 59,519 - -0.8 59,535 - -1.8 59,694 + EX28DRAFT_4397 0.24 -1.1 59,807 - EX28DRAFT_4397 0.40 -2.1 59,807 - EX28DRAFT_4397 0.40 -1.2 59,889 - EX28DRAFT_4397 0.51 -2.0 59,896 + EX28DRAFT_4397 0.52 -2.5 59,897 - EX28DRAFT_4397 0.52 -2.2
Or see this region's nucleotide sequence