Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4374

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4371 and EX28DRAFT_4372 are separated by 199 nucleotidesEX28DRAFT_4372 and EX28DRAFT_4373 are separated by 2 nucleotidesEX28DRAFT_4373 and EX28DRAFT_4374 are separated by 39 nucleotidesEX28DRAFT_4374 and EX28DRAFT_4375 overlap by 4 nucleotidesEX28DRAFT_4375 and EX28DRAFT_4376 overlap by 4 nucleotides EX28DRAFT_4371: EX28DRAFT_4371 - Esterase/lipase, at 36,912 to 37,832 _4371 EX28DRAFT_4372: EX28DRAFT_4372 - Ribbon-helix-helix protein, copG family, at 38,032 to 38,274 _4372 EX28DRAFT_4373: EX28DRAFT_4373 - Predicted nucleic acid-binding protein, contains PIN domain, at 38,277 to 38,648 _4373 EX28DRAFT_4374: EX28DRAFT_4374 - formate dehydrogenase accessory protein FdhE, at 38,688 to 39,617 _4374 EX28DRAFT_4375: EX28DRAFT_4375 - formate dehydrogenase, gamma subunit, at 39,614 to 40,249 _4375 EX28DRAFT_4376: EX28DRAFT_4376 - formate dehydrogenase, beta subunit, Fe-S containing, at 40,246 to 41,148 _4376 Position (kb) 38 39 40Strain fitness (log2 ratio) -2 -1 0 1 2at 37.732 kb on + strand, within EX28DRAFT_4371at 37.732 kb on + strand, within EX28DRAFT_4371at 37.732 kb on + strand, within EX28DRAFT_4371at 37.733 kb on - strand, within EX28DRAFT_4371at 37.859 kb on + strandat 37.860 kb on - strandat 37.879 kb on + strandat 37.880 kb on - strandat 37.953 kb on + strandat 37.953 kb on + strandat 37.987 kb on + strandat 37.987 kb on + strandat 37.988 kb on - strandat 38.019 kb on - strandat 38.019 kb on - strandat 38.022 kb on - strandat 38.031 kb on + strandat 38.031 kb on + strandat 38.032 kb on - strandat 38.032 kb on - strandat 38.090 kb on + strand, within EX28DRAFT_4372at 38.091 kb on - strand, within EX28DRAFT_4372at 38.167 kb on + strand, within EX28DRAFT_4372at 38.168 kb on - strand, within EX28DRAFT_4372at 38.246 kb on - strand, within EX28DRAFT_4372at 38.272 kb on + strandat 38.273 kb on - strandat 38.307 kb on - strandat 38.307 kb on - strandat 38.307 kb on - strandat 38.307 kb on - strandat 38.325 kb on - strand, within EX28DRAFT_4373at 38.597 kb on + strand, within EX28DRAFT_4373at 38.646 kb on + strandat 38.685 kb on + strandat 38.685 kb on + strandat 38.685 kb on + strandat 38.689 kb on + strandat 38.689 kb on + strandat 38.689 kb on + strandat 38.837 kb on - strand, within EX28DRAFT_4374at 38.837 kb on - strand, within EX28DRAFT_4374at 38.899 kb on + strand, within EX28DRAFT_4374at 38.899 kb on + strand, within EX28DRAFT_4374at 38.899 kb on + strand, within EX28DRAFT_4374at 38.900 kb on - strand, within EX28DRAFT_4374at 38.900 kb on - strand, within EX28DRAFT_4374at 39.119 kb on - strand, within EX28DRAFT_4374at 39.141 kb on - strand, within EX28DRAFT_4374at 39.556 kb on + strandat 39.557 kb on - strandat 39.655 kb on - strandat 39.686 kb on - strand, within EX28DRAFT_4375at 39.744 kb on + strand, within EX28DRAFT_4375at 39.744 kb on + strand, within EX28DRAFT_4375at 39.748 kb on + strand, within EX28DRAFT_4375at 39.748 kb on + strand, within EX28DRAFT_4375at 39.748 kb on + strand, within EX28DRAFT_4375at 39.749 kb on - strand, within EX28DRAFT_4375at 39.749 kb on - strand, within EX28DRAFT_4375at 39.749 kb on - strand, within EX28DRAFT_4375at 39.749 kb on - strand, within EX28DRAFT_4375at 39.749 kb on - strand, within EX28DRAFT_4375at 39.844 kb on - strand, within EX28DRAFT_4375at 39.892 kb on + strand, within EX28DRAFT_4375at 39.931 kb on - strand, within EX28DRAFT_4375at 39.971 kb on - strand, within EX28DRAFT_4375at 39.971 kb on - strand, within EX28DRAFT_4375at 39.977 kb on - strand, within EX28DRAFT_4375at 39.992 kb on + strand, within EX28DRAFT_4375at 39.992 kb on + strand, within EX28DRAFT_4375at 39.993 kb on - strand, within EX28DRAFT_4375at 39.994 kb on + strand, within EX28DRAFT_4375at 40.010 kb on + strand, within EX28DRAFT_4375at 40.011 kb on - strand, within EX28DRAFT_4375at 40.011 kb on - strand, within EX28DRAFT_4375at 40.011 kb on - strand, within EX28DRAFT_4375at 40.011 kb on - strand, within EX28DRAFT_4375at 40.015 kb on + strand, within EX28DRAFT_4375at 40.045 kb on + strand, within EX28DRAFT_4375at 40.221 kb on + strandat 40.323 kb on - strandat 40.472 kb on + strand, within EX28DRAFT_4376at 40.473 kb on - strand, within EX28DRAFT_4376at 40.473 kb on - strand, within EX28DRAFT_4376at 40.575 kb on + strand, within EX28DRAFT_4376at 40.576 kb on - strand, within EX28DRAFT_4376

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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37,732 + EX28DRAFT_4371 0.89 -0.2
37,732 + EX28DRAFT_4371 0.89 -1.5
37,732 + EX28DRAFT_4371 0.89 +1.3
37,733 - EX28DRAFT_4371 0.89 +0.2
37,859 + +0.2
37,860 - +0.2
37,879 + -1.5
37,880 - +0.4
37,953 + +0.7
37,953 + +0.5
37,987 + +0.4
37,987 + +0.1
37,988 - +0.1
38,019 - +1.0
38,019 - +0.2
38,022 - -0.3
38,031 + -1.2
38,031 + +1.3
38,032 - -2.5
38,032 - -0.1
38,090 + EX28DRAFT_4372 0.24 +1.6
38,091 - EX28DRAFT_4372 0.24 -0.8
38,167 + EX28DRAFT_4372 0.56 -0.3
38,168 - EX28DRAFT_4372 0.56 -0.4
38,246 - EX28DRAFT_4372 0.88 +0.7
38,272 + +0.2
38,273 - +0.4
38,307 - +1.2
38,307 - -0.2
38,307 - -0.3
38,307 - -0.4
38,325 - EX28DRAFT_4373 0.13 -0.4
38,597 + EX28DRAFT_4373 0.86 +0.2
38,646 + -0.2
38,685 + -0.6
38,685 + +1.9
38,685 + +0.5
38,689 + +0.6
38,689 + -0.5
38,689 + +0.1
38,837 - EX28DRAFT_4374 0.16 +0.4
38,837 - EX28DRAFT_4374 0.16 -0.1
38,899 + EX28DRAFT_4374 0.23 -0.1
38,899 + EX28DRAFT_4374 0.23 +0.1
38,899 + EX28DRAFT_4374 0.23 -0.1
38,900 - EX28DRAFT_4374 0.23 -0.3
38,900 - EX28DRAFT_4374 0.23 +0.4
39,119 - EX28DRAFT_4374 0.46 +0.7
39,141 - EX28DRAFT_4374 0.49 +1.2
39,556 + +0.1
39,557 - -0.3
39,655 - +0.0
39,686 - EX28DRAFT_4375 0.11 +0.2
39,744 + EX28DRAFT_4375 0.20 -0.2
39,744 + EX28DRAFT_4375 0.20 +0.3
39,748 + EX28DRAFT_4375 0.21 +0.0
39,748 + EX28DRAFT_4375 0.21 +0.1
39,748 + EX28DRAFT_4375 0.21 +0.0
39,749 - EX28DRAFT_4375 0.21 -0.3
39,749 - EX28DRAFT_4375 0.21 +1.0
39,749 - EX28DRAFT_4375 0.21 +0.1
39,749 - EX28DRAFT_4375 0.21 -0.7
39,749 - EX28DRAFT_4375 0.21 -0.0
39,844 - EX28DRAFT_4375 0.36 -0.4
39,892 + EX28DRAFT_4375 0.44 -0.2
39,931 - EX28DRAFT_4375 0.50 -0.2
39,971 - EX28DRAFT_4375 0.56 +0.0
39,971 - EX28DRAFT_4375 0.56 -0.0
39,977 - EX28DRAFT_4375 0.57 +0.1
39,992 + EX28DRAFT_4375 0.59 +0.0
39,992 + EX28DRAFT_4375 0.59 -0.5
39,993 - EX28DRAFT_4375 0.60 +0.3
39,994 + EX28DRAFT_4375 0.60 -1.2
40,010 + EX28DRAFT_4375 0.62 -0.2
40,011 - EX28DRAFT_4375 0.62 +0.2
40,011 - EX28DRAFT_4375 0.62 +0.2
40,011 - EX28DRAFT_4375 0.62 +0.3
40,011 - EX28DRAFT_4375 0.62 +0.5
40,015 + EX28DRAFT_4375 0.63 +0.3
40,045 + EX28DRAFT_4375 0.68 +0.1
40,221 + +0.1
40,323 - -0.7
40,472 + EX28DRAFT_4376 0.25 -0.1
40,473 - EX28DRAFT_4376 0.25 +0.3
40,473 - EX28DRAFT_4376 0.25 +1.0
40,575 + EX28DRAFT_4376 0.36 -0.3
40,576 - EX28DRAFT_4376 0.37 -0.2

Or see this region's nucleotide sequence