Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4285

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4284 and EX28DRAFT_4285 are separated by 97 nucleotidesEX28DRAFT_4285 and EX28DRAFT_4286 are separated by 254 nucleotidesEX28DRAFT_4286 and EX28DRAFT_4287 are separated by 1 nucleotides EX28DRAFT_4284: EX28DRAFT_4284 - ABC-type sugar transport systems, permease components, at 87,799 to 88,716 _4284 EX28DRAFT_4285: EX28DRAFT_4285 - ABC-type sugar transport system, periplasmic component, at 88,814 to 90,130 _4285 EX28DRAFT_4286: EX28DRAFT_4286 - ABC-type branched-chain amino acid transport systems, ATPase component, at 90,385 to 91,098 _4286 EX28DRAFT_4287: EX28DRAFT_4287 - ABC-type branched-chain amino acid transport systems, ATPase component, at 91,100 to 91,867 _4287 Position (kb) 88 89 90 91Strain fitness (log2 ratio) -2 -1 0 1at 87.816 kb on + strandat 87.828 kb on - strandat 87.934 kb on - strand, within EX28DRAFT_4284at 87.935 kb on + strand, within EX28DRAFT_4284at 87.936 kb on - strand, within EX28DRAFT_4284at 87.936 kb on - strand, within EX28DRAFT_4284at 87.940 kb on - strand, within EX28DRAFT_4284at 88.172 kb on + strand, within EX28DRAFT_4284at 88.172 kb on + strand, within EX28DRAFT_4284at 88.176 kb on + strand, within EX28DRAFT_4284at 88.176 kb on + strand, within EX28DRAFT_4284at 88.176 kb on + strand, within EX28DRAFT_4284at 88.177 kb on - strand, within EX28DRAFT_4284at 88.177 kb on - strand, within EX28DRAFT_4284at 88.343 kb on + strand, within EX28DRAFT_4284at 88.371 kb on + strand, within EX28DRAFT_4284at 88.391 kb on + strand, within EX28DRAFT_4284at 88.391 kb on + strand, within EX28DRAFT_4284at 88.391 kb on + strand, within EX28DRAFT_4284at 88.487 kb on + strand, within EX28DRAFT_4284at 88.487 kb on + strand, within EX28DRAFT_4284at 88.488 kb on - strand, within EX28DRAFT_4284at 88.488 kb on - strand, within EX28DRAFT_4284at 88.488 kb on - strand, within EX28DRAFT_4284at 88.600 kb on - strand, within EX28DRAFT_4284at 88.687 kb on - strandat 88.687 kb on - strandat 88.699 kb on + strandat 88.700 kb on - strandat 88.700 kb on - strandat 88.703 kb on + strandat 88.703 kb on + strandat 88.703 kb on + strandat 88.703 kb on + strandat 88.704 kb on - strandat 88.816 kb on - strandat 89.169 kb on + strand, within EX28DRAFT_4285at 89.169 kb on + strand, within EX28DRAFT_4285at 89.170 kb on - strand, within EX28DRAFT_4285at 89.257 kb on - strand, within EX28DRAFT_4285at 89.292 kb on + strand, within EX28DRAFT_4285at 89.332 kb on + strand, within EX28DRAFT_4285at 89.333 kb on - strand, within EX28DRAFT_4285at 89.353 kb on - strand, within EX28DRAFT_4285at 89.389 kb on - strand, within EX28DRAFT_4285at 89.389 kb on - strand, within EX28DRAFT_4285at 89.607 kb on + strand, within EX28DRAFT_4285at 89.608 kb on - strand, within EX28DRAFT_4285at 89.608 kb on - strand, within EX28DRAFT_4285at 89.682 kb on + strand, within EX28DRAFT_4285at 89.682 kb on + strand, within EX28DRAFT_4285at 89.682 kb on + strand, within EX28DRAFT_4285at 89.682 kb on + strand, within EX28DRAFT_4285at 89.685 kb on + strand, within EX28DRAFT_4285at 89.686 kb on - strand, within EX28DRAFT_4285at 89.748 kb on + strand, within EX28DRAFT_4285at 89.749 kb on - strand, within EX28DRAFT_4285at 89.869 kb on - strand, within EX28DRAFT_4285at 89.876 kb on + strand, within EX28DRAFT_4285at 89.938 kb on - strand, within EX28DRAFT_4285at 89.938 kb on - strand, within EX28DRAFT_4285at 89.949 kb on + strand, within EX28DRAFT_4285at 90.144 kb on - strandat 90.144 kb on - strandat 90.174 kb on + strandat 90.175 kb on - strandat 90.234 kb on + strandat 90.235 kb on - strandat 90.382 kb on + strandat 90.382 kb on + strandat 90.398 kb on + strandat 90.561 kb on + strand, within EX28DRAFT_4286at 90.738 kb on - strand, within EX28DRAFT_4286at 90.738 kb on - strand, within EX28DRAFT_4286at 90.739 kb on + strand, within EX28DRAFT_4286at 90.739 kb on + strand, within EX28DRAFT_4286at 90.740 kb on - strand, within EX28DRAFT_4286at 90.901 kb on - strand, within EX28DRAFT_4286at 91.102 kb on - strandat 91.102 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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87,816 + +0.8
87,828 - -0.4
87,934 - EX28DRAFT_4284 0.15 +0.8
87,935 + EX28DRAFT_4284 0.15 -0.7
87,936 - EX28DRAFT_4284 0.15 -0.0
87,936 - EX28DRAFT_4284 0.15 -0.6
87,940 - EX28DRAFT_4284 0.15 +0.3
88,172 + EX28DRAFT_4284 0.41 +0.1
88,172 + EX28DRAFT_4284 0.41 -0.2
88,176 + EX28DRAFT_4284 0.41 +0.2
88,176 + EX28DRAFT_4284 0.41 +0.1
88,176 + EX28DRAFT_4284 0.41 -0.6
88,177 - EX28DRAFT_4284 0.41 -0.2
88,177 - EX28DRAFT_4284 0.41 +0.1
88,343 + EX28DRAFT_4284 0.59 -1.5
88,371 + EX28DRAFT_4284 0.62 +0.2
88,391 + EX28DRAFT_4284 0.64 +0.2
88,391 + EX28DRAFT_4284 0.64 -0.4
88,391 + EX28DRAFT_4284 0.64 +0.3
88,487 + EX28DRAFT_4284 0.75 +0.4
88,487 + EX28DRAFT_4284 0.75 -0.1
88,488 - EX28DRAFT_4284 0.75 +0.2
88,488 - EX28DRAFT_4284 0.75 -0.0
88,488 - EX28DRAFT_4284 0.75 +0.0
88,600 - EX28DRAFT_4284 0.87 +0.9
88,687 - -0.2
88,687 - +0.2
88,699 + +0.5
88,700 - +0.2
88,700 - +0.1
88,703 + +0.4
88,703 + +0.1
88,703 + +0.3
88,703 + +0.3
88,704 - -0.1
88,816 - +0.7
89,169 + EX28DRAFT_4285 0.27 +1.0
89,169 + EX28DRAFT_4285 0.27 -0.6
89,170 - EX28DRAFT_4285 0.27 +0.5
89,257 - EX28DRAFT_4285 0.34 +0.3
89,292 + EX28DRAFT_4285 0.36 -0.3
89,332 + EX28DRAFT_4285 0.39 +0.1
89,333 - EX28DRAFT_4285 0.39 -0.1
89,353 - EX28DRAFT_4285 0.41 +0.5
89,389 - EX28DRAFT_4285 0.44 -0.9
89,389 - EX28DRAFT_4285 0.44 +0.1
89,607 + EX28DRAFT_4285 0.60 +0.1
89,608 - EX28DRAFT_4285 0.60 +1.2
89,608 - EX28DRAFT_4285 0.60 -0.4
89,682 + EX28DRAFT_4285 0.66 +0.8
89,682 + EX28DRAFT_4285 0.66 +0.3
89,682 + EX28DRAFT_4285 0.66 -0.5
89,682 + EX28DRAFT_4285 0.66 +0.0
89,685 + EX28DRAFT_4285 0.66 +1.6
89,686 - EX28DRAFT_4285 0.66 +0.6
89,748 + EX28DRAFT_4285 0.71 -0.3
89,749 - EX28DRAFT_4285 0.71 -0.2
89,869 - EX28DRAFT_4285 0.80 +0.1
89,876 + EX28DRAFT_4285 0.81 +0.1
89,938 - EX28DRAFT_4285 0.85 -1.3
89,938 - EX28DRAFT_4285 0.85 +0.5
89,949 + EX28DRAFT_4285 0.86 +0.2
90,144 - -0.3
90,144 - +0.1
90,174 + +0.3
90,175 - -0.0
90,234 + -0.0
90,235 - -2.6
90,382 + -1.3
90,382 + -0.3
90,398 + +0.1
90,561 + EX28DRAFT_4286 0.25 +0.2
90,738 - EX28DRAFT_4286 0.49 +0.9
90,738 - EX28DRAFT_4286 0.49 +0.4
90,739 + EX28DRAFT_4286 0.50 -0.3
90,739 + EX28DRAFT_4286 0.50 -1.4
90,740 - EX28DRAFT_4286 0.50 +0.1
90,901 - EX28DRAFT_4286 0.72 +1.3
91,102 - -0.3
91,102 - -1.4

Or see this region's nucleotide sequence