Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4264

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4263 and EX28DRAFT_4264 are separated by 82 nucleotidesEX28DRAFT_4264 and EX28DRAFT_4265 are separated by 172 nucleotidesEX28DRAFT_4265 and EX28DRAFT_4266 are separated by 115 nucleotides EX28DRAFT_4263: EX28DRAFT_4263 - tRNA dihydrouridine synthase A, at 67,871 to 68,865 _4263 EX28DRAFT_4264: EX28DRAFT_4264 - F plasmid transfer operon, TraF, protein, at 68,948 to 70,258 _4264 EX28DRAFT_4265: EX28DRAFT_4265 - Uncharacterized conserved protein, contains double-stranded beta-helix domain, at 70,431 to 70,919 _4265 EX28DRAFT_4266: EX28DRAFT_4266 - Fe2+/Zn2+ uptake regulation proteins, at 71,035 to 71,547 _4266 Position (kb) 68 69 70 71Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 68.002 kb on + strand, within EX28DRAFT_4263at 68.025 kb on + strand, within EX28DRAFT_4263at 68.025 kb on + strand, within EX28DRAFT_4263at 68.025 kb on + strand, within EX28DRAFT_4263at 68.055 kb on + strand, within EX28DRAFT_4263at 68.055 kb on + strand, within EX28DRAFT_4263at 68.061 kb on + strand, within EX28DRAFT_4263at 68.062 kb on - strand, within EX28DRAFT_4263at 68.155 kb on - strand, within EX28DRAFT_4263at 68.185 kb on + strand, within EX28DRAFT_4263at 68.186 kb on - strand, within EX28DRAFT_4263at 68.689 kb on - strand, within EX28DRAFT_4263at 68.689 kb on - strand, within EX28DRAFT_4263at 68.698 kb on - strand, within EX28DRAFT_4263at 68.745 kb on - strand, within EX28DRAFT_4263at 68.755 kb on - strand, within EX28DRAFT_4263at 68.781 kb on - strandat 68.852 kb on - strandat 68.876 kb on + strandat 68.904 kb on + strandat 68.904 kb on + strandat 68.905 kb on - strandat 68.905 kb on - strandat 68.905 kb on - strandat 68.906 kb on + strandat 68.949 kb on + strandat 68.950 kb on - strandat 69.000 kb on + strandat 69.107 kb on + strand, within EX28DRAFT_4264at 69.131 kb on - strand, within EX28DRAFT_4264at 69.163 kb on + strand, within EX28DRAFT_4264at 69.163 kb on + strand, within EX28DRAFT_4264at 69.163 kb on + strand, within EX28DRAFT_4264at 69.164 kb on - strand, within EX28DRAFT_4264at 69.271 kb on - strand, within EX28DRAFT_4264at 69.281 kb on - strand, within EX28DRAFT_4264at 69.282 kb on + strand, within EX28DRAFT_4264at 69.283 kb on - strand, within EX28DRAFT_4264at 69.283 kb on - strand, within EX28DRAFT_4264at 69.477 kb on + strand, within EX28DRAFT_4264at 69.492 kb on + strand, within EX28DRAFT_4264at 69.493 kb on - strand, within EX28DRAFT_4264at 69.493 kb on - strand, within EX28DRAFT_4264at 69.496 kb on + strand, within EX28DRAFT_4264at 69.496 kb on + strand, within EX28DRAFT_4264at 69.497 kb on - strand, within EX28DRAFT_4264at 69.498 kb on + strand, within EX28DRAFT_4264at 69.498 kb on + strand, within EX28DRAFT_4264at 69.498 kb on + strand, within EX28DRAFT_4264at 69.498 kb on + strand, within EX28DRAFT_4264at 69.499 kb on - strand, within EX28DRAFT_4264at 69.499 kb on - strand, within EX28DRAFT_4264at 69.499 kb on - strand, within EX28DRAFT_4264at 69.499 kb on - strand, within EX28DRAFT_4264at 69.499 kb on - strand, within EX28DRAFT_4264at 69.499 kb on - strand, within EX28DRAFT_4264at 69.717 kb on + strand, within EX28DRAFT_4264at 69.718 kb on - strand, within EX28DRAFT_4264at 69.967 kb on + strand, within EX28DRAFT_4264at 69.968 kb on - strand, within EX28DRAFT_4264at 69.968 kb on - strand, within EX28DRAFT_4264at 69.969 kb on + strand, within EX28DRAFT_4264at 69.969 kb on + strand, within EX28DRAFT_4264at 69.994 kb on + strand, within EX28DRAFT_4264at 69.995 kb on - strand, within EX28DRAFT_4264at 69.998 kb on + strand, within EX28DRAFT_4264at 69.998 kb on + strand, within EX28DRAFT_4264at 69.998 kb on + strand, within EX28DRAFT_4264at 69.998 kb on + strand, within EX28DRAFT_4264at 69.999 kb on - strand, within EX28DRAFT_4264at 69.999 kb on - strand, within EX28DRAFT_4264at 69.999 kb on - strand, within EX28DRAFT_4264at 69.999 kb on - strand, within EX28DRAFT_4264at 70.123 kb on - strand, within EX28DRAFT_4264at 70.123 kb on - strand, within EX28DRAFT_4264at 70.181 kb on - strandat 70.272 kb on + strandat 70.272 kb on + strandat 70.273 kb on - strandat 70.273 kb on - strandat 70.273 kb on - strandat 70.323 kb on + strandat 70.336 kb on - strandat 70.339 kb on + strandat 70.340 kb on - strandat 70.340 kb on - strandat 70.371 kb on - strandat 70.371 kb on - strandat 70.414 kb on - strandat 70.513 kb on + strand, within EX28DRAFT_4265at 70.513 kb on + strand, within EX28DRAFT_4265at 70.515 kb on + strand, within EX28DRAFT_4265at 70.516 kb on - strand, within EX28DRAFT_4265at 70.535 kb on - strand, within EX28DRAFT_4265at 70.535 kb on - strand, within EX28DRAFT_4265at 70.535 kb on - strand, within EX28DRAFT_4265at 70.672 kb on + strand, within EX28DRAFT_4265at 70.673 kb on - strand, within EX28DRAFT_4265at 70.712 kb on - strand, within EX28DRAFT_4265at 70.747 kb on + strand, within EX28DRAFT_4265at 70.747 kb on + strand, within EX28DRAFT_4265at 70.787 kb on + strand, within EX28DRAFT_4265at 70.924 kb on + strandat 70.924 kb on + strandat 70.925 kb on - strandat 70.953 kb on - strandat 70.953 kb on - strandat 70.995 kb on - strandat 71.015 kb on + strandat 71.015 kb on + strandat 71.040 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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68,002 + EX28DRAFT_4263 0.13 +0.7
68,025 + EX28DRAFT_4263 0.15 +0.0
68,025 + EX28DRAFT_4263 0.15 +0.0
68,025 + EX28DRAFT_4263 0.15 -0.3
68,055 + EX28DRAFT_4263 0.18 +0.4
68,055 + EX28DRAFT_4263 0.18 +0.2
68,061 + EX28DRAFT_4263 0.19 -0.1
68,062 - EX28DRAFT_4263 0.19 -0.4
68,155 - EX28DRAFT_4263 0.29 -1.1
68,185 + EX28DRAFT_4263 0.32 +0.1
68,186 - EX28DRAFT_4263 0.32 -0.6
68,689 - EX28DRAFT_4263 0.82 +0.9
68,689 - EX28DRAFT_4263 0.82 +0.7
68,698 - EX28DRAFT_4263 0.83 -0.0
68,745 - EX28DRAFT_4263 0.88 -0.7
68,755 - EX28DRAFT_4263 0.89 -0.4
68,781 - -0.4
68,852 - -0.3
68,876 + +0.0
68,904 + +1.0
68,904 + -0.1
68,905 - +0.3
68,905 - -0.2
68,905 - +0.5
68,906 + +0.3
68,949 + +0.1
68,950 - -0.3
69,000 + -0.3
69,107 + EX28DRAFT_4264 0.12 -0.5
69,131 - EX28DRAFT_4264 0.14 +0.1
69,163 + EX28DRAFT_4264 0.16 +0.0
69,163 + EX28DRAFT_4264 0.16 +1.0
69,163 + EX28DRAFT_4264 0.16 -0.2
69,164 - EX28DRAFT_4264 0.16 -0.0
69,271 - EX28DRAFT_4264 0.25 -0.6
69,281 - EX28DRAFT_4264 0.25 +0.1
69,282 + EX28DRAFT_4264 0.25 -0.1
69,283 - EX28DRAFT_4264 0.26 +0.1
69,283 - EX28DRAFT_4264 0.26 +0.3
69,477 + EX28DRAFT_4264 0.40 -0.4
69,492 + EX28DRAFT_4264 0.41 -0.3
69,493 - EX28DRAFT_4264 0.42 +0.7
69,493 - EX28DRAFT_4264 0.42 -1.0
69,496 + EX28DRAFT_4264 0.42 -1.8
69,496 + EX28DRAFT_4264 0.42 -0.2
69,497 - EX28DRAFT_4264 0.42 +0.4
69,498 + EX28DRAFT_4264 0.42 -1.4
69,498 + EX28DRAFT_4264 0.42 +0.7
69,498 + EX28DRAFT_4264 0.42 +0.3
69,498 + EX28DRAFT_4264 0.42 +0.0
69,499 - EX28DRAFT_4264 0.42 -0.1
69,499 - EX28DRAFT_4264 0.42 +0.3
69,499 - EX28DRAFT_4264 0.42 +1.0
69,499 - EX28DRAFT_4264 0.42 +0.2
69,499 - EX28DRAFT_4264 0.42 +0.6
69,499 - EX28DRAFT_4264 0.42 -0.4
69,717 + EX28DRAFT_4264 0.59 +0.1
69,718 - EX28DRAFT_4264 0.59 -0.4
69,967 + EX28DRAFT_4264 0.78 -1.2
69,968 - EX28DRAFT_4264 0.78 -0.5
69,968 - EX28DRAFT_4264 0.78 -2.4
69,969 + EX28DRAFT_4264 0.78 -0.5
69,969 + EX28DRAFT_4264 0.78 -0.1
69,994 + EX28DRAFT_4264 0.80 +0.9
69,995 - EX28DRAFT_4264 0.80 -0.3
69,998 + EX28DRAFT_4264 0.80 +0.7
69,998 + EX28DRAFT_4264 0.80 +1.5
69,998 + EX28DRAFT_4264 0.80 +0.5
69,998 + EX28DRAFT_4264 0.80 -0.9
69,999 - EX28DRAFT_4264 0.80 +0.5
69,999 - EX28DRAFT_4264 0.80 +0.8
69,999 - EX28DRAFT_4264 0.80 +0.2
69,999 - EX28DRAFT_4264 0.80 -1.1
70,123 - EX28DRAFT_4264 0.90 -3.1
70,123 - EX28DRAFT_4264 0.90 +0.0
70,181 - +0.3
70,272 + +0.2
70,272 + +0.5
70,273 - +0.0
70,273 - -0.4
70,273 - +1.0
70,323 + -0.3
70,336 - -0.3
70,339 + -0.5
70,340 - -0.4
70,340 - -0.0
70,371 - -0.3
70,371 - +0.0
70,414 - +0.3
70,513 + EX28DRAFT_4265 0.17 -3.3
70,513 + EX28DRAFT_4265 0.17 +0.2
70,515 + EX28DRAFT_4265 0.17 +0.4
70,516 - EX28DRAFT_4265 0.17 +0.0
70,535 - EX28DRAFT_4265 0.21 +2.0
70,535 - EX28DRAFT_4265 0.21 -0.2
70,535 - EX28DRAFT_4265 0.21 -0.2
70,672 + EX28DRAFT_4265 0.49 +0.7
70,673 - EX28DRAFT_4265 0.49 +0.4
70,712 - EX28DRAFT_4265 0.57 -0.0
70,747 + EX28DRAFT_4265 0.65 +0.0
70,747 + EX28DRAFT_4265 0.65 -0.1
70,787 + EX28DRAFT_4265 0.73 -0.1
70,924 + -0.4
70,924 + -0.2
70,925 - -0.6
70,953 - +0.2
70,953 - -0.2
70,995 - +0.7
71,015 + -0.7
71,015 + -0.0
71,040 + -0.3

Or see this region's nucleotide sequence