Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4235 and EX28DRAFT_4236 overlap by 8 nucleotides EX28DRAFT_4236 and EX28DRAFT_4237 are separated by 102 nucleotides EX28DRAFT_4237 and EX28DRAFT_4238 are separated by 76 nucleotides
EX28DRAFT_4235: EX28DRAFT_4235 - Putative effector of murein hydrolase, at 41,791 to 42,480
_4235
EX28DRAFT_4236: EX28DRAFT_4236 - Putative effector of murein hydrolase LrgA, at 42,473 to 42,883
_4236
EX28DRAFT_4237: EX28DRAFT_4237 - Transcriptional regulator, at 42,986 to 43,873
_4237
EX28DRAFT_4238: EX28DRAFT_4238 - Na+/H+ antiporter, bacterial form, at 43,950 to 45,596
_4238
Position (kb) 42
43
44 Strain fitness (log2 ratio) -1
0
1 at 42.225 kb on + strand, within EX28DRAFT_4235 at 42.311 kb on + strand, within EX28DRAFT_4235 at 42.311 kb on + strand, within EX28DRAFT_4235 at 42.328 kb on - strand, within EX28DRAFT_4235 at 42.429 kb on - strand at 42.433 kb on - strand at 42.433 kb on - strand at 42.436 kb on + strand at 42.508 kb on - strand at 42.609 kb on + strand, within EX28DRAFT_4236 at 42.610 kb on - strand, within EX28DRAFT_4236 at 42.716 kb on - strand, within EX28DRAFT_4236 at 42.783 kb on + strand, within EX28DRAFT_4236 at 42.784 kb on - strand, within EX28DRAFT_4236 at 42.918 kb on + strand at 42.919 kb on - strand at 42.920 kb on + strand at 42.920 kb on + strand at 42.921 kb on - strand at 42.921 kb on - strand at 42.952 kb on - strand at 42.966 kb on + strand at 42.966 kb on + strand at 42.969 kb on - strand at 42.993 kb on + strand at 43.040 kb on - strand at 43.565 kb on + strand, within EX28DRAFT_4237 at 43.566 kb on - strand, within EX28DRAFT_4237 at 43.618 kb on + strand, within EX28DRAFT_4237 at 43.715 kb on - strand, within EX28DRAFT_4237 at 43.715 kb on - strand, within EX28DRAFT_4237 at 43.809 kb on - strand at 43.809 kb on - strand at 43.812 kb on + strand at 43.910 kb on + strand at 43.911 kb on - strand at 43.911 kb on - strand at 44.048 kb on - strand at 44.288 kb on + strand, within EX28DRAFT_4238 at 44.330 kb on + strand, within EX28DRAFT_4238 at 44.330 kb on + strand, within EX28DRAFT_4238 at 44.331 kb on - strand, within EX28DRAFT_4238 at 44.331 kb on - strand, within EX28DRAFT_4238 at 44.354 kb on + strand, within EX28DRAFT_4238 at 44.355 kb on - strand, within EX28DRAFT_4238 at 44.355 kb on - strand, within EX28DRAFT_4238 at 44.626 kb on + strand, within EX28DRAFT_4238
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 42,225 + EX28DRAFT_4235 0.63 +0.0 42,311 + EX28DRAFT_4235 0.75 +0.7 42,311 + EX28DRAFT_4235 0.75 -0.5 42,328 - EX28DRAFT_4235 0.78 +0.3 42,429 - +0.0 42,433 - -0.0 42,433 - -0.3 42,436 + -0.5 42,508 - +0.3 42,609 + EX28DRAFT_4236 0.33 +0.6 42,610 - EX28DRAFT_4236 0.33 +0.4 42,716 - EX28DRAFT_4236 0.59 +0.1 42,783 + EX28DRAFT_4236 0.75 -1.3 42,784 - EX28DRAFT_4236 0.76 +0.7 42,918 + +0.6 42,919 - -0.6 42,920 + +0.3 42,920 + +0.4 42,921 - -0.3 42,921 - +0.1 42,952 - -0.2 42,966 + +0.1 42,966 + +0.8 42,969 - +0.7 42,993 + +0.0 43,040 - -0.3 43,565 + EX28DRAFT_4237 0.65 -1.5 43,566 - EX28DRAFT_4237 0.65 -0.0 43,618 + EX28DRAFT_4237 0.71 -0.4 43,715 - EX28DRAFT_4237 0.82 -0.6 43,715 - EX28DRAFT_4237 0.82 -0.1 43,809 - +0.4 43,809 - +0.7 43,812 + +0.8 43,910 + -0.4 43,911 - +0.6 43,911 - -0.0 44,048 - +0.5 44,288 + EX28DRAFT_4238 0.21 -0.2 44,330 + EX28DRAFT_4238 0.23 -0.4 44,330 + EX28DRAFT_4238 0.23 +0.1 44,331 - EX28DRAFT_4238 0.23 -1.1 44,331 - EX28DRAFT_4238 0.23 -1.4 44,354 + EX28DRAFT_4238 0.25 -0.1 44,355 - EX28DRAFT_4238 0.25 -1.5 44,355 - EX28DRAFT_4238 0.25 +0.3 44,626 + EX28DRAFT_4238 0.41 +0.3
Or see this region's nucleotide sequence