Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4232

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4231 and EX28DRAFT_4232 are separated by 423 nucleotidesEX28DRAFT_4232 and EX28DRAFT_4233 are separated by 135 nucleotidesEX28DRAFT_4233 and EX28DRAFT_4234 overlap by 4 nucleotides EX28DRAFT_4231: EX28DRAFT_4231 - Na+/H+-dicarboxylate symporters, at 35,967 to 37,280 _4231 EX28DRAFT_4232: EX28DRAFT_4232 - acetate--CoA ligase, at 37,704 to 39,662 _4232 EX28DRAFT_4233: EX28DRAFT_4233 - Predicted membrane protein, at 39,798 to 40,112 _4233 EX28DRAFT_4234: EX28DRAFT_4234 - cation/acetate symporter ActP, at 40,109 to 41,758 _4234 Position (kb) 37 38 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 36.854 kb on + strand, within EX28DRAFT_4231at 36.855 kb on - strand, within EX28DRAFT_4231at 36.855 kb on - strand, within EX28DRAFT_4231at 36.899 kb on + strand, within EX28DRAFT_4231at 36.900 kb on - strand, within EX28DRAFT_4231at 36.900 kb on - strand, within EX28DRAFT_4231at 36.941 kb on + strand, within EX28DRAFT_4231at 36.941 kb on + strand, within EX28DRAFT_4231at 36.942 kb on - strand, within EX28DRAFT_4231at 36.942 kb on - strand, within EX28DRAFT_4231at 37.021 kb on + strand, within EX28DRAFT_4231at 37.021 kb on + strand, within EX28DRAFT_4231at 37.021 kb on + strand, within EX28DRAFT_4231at 37.025 kb on + strand, within EX28DRAFT_4231at 37.026 kb on - strand, within EX28DRAFT_4231at 37.043 kb on + strand, within EX28DRAFT_4231at 37.143 kb on - strand, within EX28DRAFT_4231at 37.340 kb on + strandat 37.340 kb on + strandat 37.341 kb on - strandat 37.401 kb on + strandat 37.402 kb on - strandat 37.402 kb on - strandat 37.486 kb on + strandat 37.555 kb on + strandat 37.591 kb on - strandat 37.641 kb on - strandat 37.672 kb on - strandat 37.685 kb on + strandat 37.715 kb on - strandat 37.715 kb on - strandat 37.773 kb on + strandat 37.797 kb on - strandat 37.904 kb on + strand, within EX28DRAFT_4232at 37.905 kb on - strand, within EX28DRAFT_4232at 38.024 kb on + strand, within EX28DRAFT_4232at 38.025 kb on - strand, within EX28DRAFT_4232at 38.025 kb on - strand, within EX28DRAFT_4232at 38.025 kb on - strand, within EX28DRAFT_4232at 38.025 kb on - strand, within EX28DRAFT_4232at 38.025 kb on - strand, within EX28DRAFT_4232at 38.027 kb on + strand, within EX28DRAFT_4232at 38.027 kb on + strand, within EX28DRAFT_4232at 38.027 kb on + strand, within EX28DRAFT_4232at 38.027 kb on + strand, within EX28DRAFT_4232at 38.028 kb on - strand, within EX28DRAFT_4232at 38.028 kb on - strand, within EX28DRAFT_4232at 38.031 kb on + strand, within EX28DRAFT_4232at 38.031 kb on + strand, within EX28DRAFT_4232at 38.031 kb on + strand, within EX28DRAFT_4232at 38.111 kb on + strand, within EX28DRAFT_4232at 38.115 kb on + strand, within EX28DRAFT_4232at 38.115 kb on + strand, within EX28DRAFT_4232at 38.115 kb on + strand, within EX28DRAFT_4232at 38.115 kb on + strand, within EX28DRAFT_4232at 38.115 kb on + strand, within EX28DRAFT_4232at 38.116 kb on - strand, within EX28DRAFT_4232at 38.116 kb on - strand, within EX28DRAFT_4232at 38.116 kb on - strand, within EX28DRAFT_4232at 38.116 kb on - strand, within EX28DRAFT_4232at 38.116 kb on - strand, within EX28DRAFT_4232at 38.116 kb on - strand, within EX28DRAFT_4232at 38.116 kb on - strand, within EX28DRAFT_4232at 38.116 kb on - strand, within EX28DRAFT_4232at 38.118 kb on - strand, within EX28DRAFT_4232at 38.490 kb on + strand, within EX28DRAFT_4232at 38.491 kb on - strand, within EX28DRAFT_4232at 38.491 kb on - strand, within EX28DRAFT_4232at 38.493 kb on - strand, within EX28DRAFT_4232at 38.545 kb on - strand, within EX28DRAFT_4232at 38.570 kb on + strand, within EX28DRAFT_4232at 38.571 kb on - strand, within EX28DRAFT_4232at 38.571 kb on - strand, within EX28DRAFT_4232at 38.575 kb on - strand, within EX28DRAFT_4232at 38.604 kb on + strand, within EX28DRAFT_4232at 38.604 kb on + strand, within EX28DRAFT_4232at 38.605 kb on - strand, within EX28DRAFT_4232at 38.605 kb on - strand, within EX28DRAFT_4232at 38.605 kb on - strand, within EX28DRAFT_4232at 38.605 kb on - strand, within EX28DRAFT_4232at 38.605 kb on - strand, within EX28DRAFT_4232at 38.613 kb on - strand, within EX28DRAFT_4232at 38.646 kb on + strand, within EX28DRAFT_4232at 38.647 kb on - strand, within EX28DRAFT_4232at 38.647 kb on - strand, within EX28DRAFT_4232at 38.647 kb on - strand, within EX28DRAFT_4232at 38.647 kb on - strand, within EX28DRAFT_4232at 38.647 kb on - strand, within EX28DRAFT_4232at 38.655 kb on + strand, within EX28DRAFT_4232at 38.726 kb on + strand, within EX28DRAFT_4232at 38.726 kb on + strand, within EX28DRAFT_4232at 39.165 kb on + strand, within EX28DRAFT_4232at 39.165 kb on + strand, within EX28DRAFT_4232at 39.189 kb on + strand, within EX28DRAFT_4232at 39.189 kb on + strand, within EX28DRAFT_4232at 39.189 kb on + strand, within EX28DRAFT_4232at 39.229 kb on - strand, within EX28DRAFT_4232at 39.229 kb on - strand, within EX28DRAFT_4232at 39.387 kb on + strand, within EX28DRAFT_4232at 39.387 kb on + strand, within EX28DRAFT_4232at 39.387 kb on + strand, within EX28DRAFT_4232at 39.388 kb on - strand, within EX28DRAFT_4232at 39.430 kb on - strand, within EX28DRAFT_4232at 39.430 kb on - strand, within EX28DRAFT_4232at 39.430 kb on - strand, within EX28DRAFT_4232at 39.455 kb on + strand, within EX28DRAFT_4232at 39.533 kb on + strandat 39.534 kb on - strandat 39.542 kb on + strandat 39.542 kb on + strandat 39.542 kb on + strandat 39.543 kb on - strandat 39.774 kb on + strandat 39.775 kb on - strandat 39.775 kb on - strandat 39.779 kb on + strandat 39.779 kb on + strandat 39.779 kb on + strandat 39.779 kb on + strandat 39.780 kb on - strandat 39.809 kb on + strandat 39.810 kb on - strandat 39.830 kb on + strand, within EX28DRAFT_4233at 39.906 kb on + strand, within EX28DRAFT_4233at 39.906 kb on + strand, within EX28DRAFT_4233at 39.907 kb on - strand, within EX28DRAFT_4233at 39.918 kb on - strand, within EX28DRAFT_4233at 39.918 kb on - strand, within EX28DRAFT_4233at 40.076 kb on + strand, within EX28DRAFT_4233at 40.077 kb on - strand, within EX28DRAFT_4233at 40.079 kb on + strand, within EX28DRAFT_4233at 40.099 kb on + strandat 40.099 kb on + strandat 40.250 kb on + strandat 40.250 kb on + strandat 40.259 kb on + strandat 40.298 kb on + strand, within EX28DRAFT_4234at 40.315 kb on + strand, within EX28DRAFT_4234at 40.315 kb on + strand, within EX28DRAFT_4234at 40.315 kb on + strand, within EX28DRAFT_4234at 40.357 kb on + strand, within EX28DRAFT_4234at 40.357 kb on + strand, within EX28DRAFT_4234at 40.425 kb on - strand, within EX28DRAFT_4234at 40.501 kb on + strand, within EX28DRAFT_4234at 40.501 kb on + strand, within EX28DRAFT_4234at 40.502 kb on - strand, within EX28DRAFT_4234at 40.590 kb on - strand, within EX28DRAFT_4234at 40.590 kb on - strand, within EX28DRAFT_4234at 40.649 kb on + strand, within EX28DRAFT_4234at 40.650 kb on - strand, within EX28DRAFT_4234

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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36,854 + EX28DRAFT_4231 0.68 +0.0
36,855 - EX28DRAFT_4231 0.68 +1.5
36,855 - EX28DRAFT_4231 0.68 +0.2
36,899 + EX28DRAFT_4231 0.71 +0.5
36,900 - EX28DRAFT_4231 0.71 -1.1
36,900 - EX28DRAFT_4231 0.71 -0.2
36,941 + EX28DRAFT_4231 0.74 -0.9
36,941 + EX28DRAFT_4231 0.74 -0.1
36,942 - EX28DRAFT_4231 0.74 +0.1
36,942 - EX28DRAFT_4231 0.74 -0.5
37,021 + EX28DRAFT_4231 0.80 -0.6
37,021 + EX28DRAFT_4231 0.80 +0.1
37,021 + EX28DRAFT_4231 0.80 -0.1
37,025 + EX28DRAFT_4231 0.81 -0.9
37,026 - EX28DRAFT_4231 0.81 -1.2
37,043 + EX28DRAFT_4231 0.82 -0.5
37,143 - EX28DRAFT_4231 0.89 +0.1
37,340 + -0.7
37,340 + -1.0
37,341 - +0.1
37,401 + +0.1
37,402 - +0.3
37,402 - -0.6
37,486 + -0.3
37,555 + -0.1
37,591 - +0.4
37,641 - +0.0
37,672 - -0.8
37,685 + +0.7
37,715 - +0.1
37,715 - -0.3
37,773 + -0.1
37,797 - -0.3
37,904 + EX28DRAFT_4232 0.10 -0.3
37,905 - EX28DRAFT_4232 0.10 -0.2
38,024 + EX28DRAFT_4232 0.16 +0.1
38,025 - EX28DRAFT_4232 0.16 -0.3
38,025 - EX28DRAFT_4232 0.16 +1.0
38,025 - EX28DRAFT_4232 0.16 +0.7
38,025 - EX28DRAFT_4232 0.16 +0.3
38,025 - EX28DRAFT_4232 0.16 -0.2
38,027 + EX28DRAFT_4232 0.16 +0.3
38,027 + EX28DRAFT_4232 0.16 -1.0
38,027 + EX28DRAFT_4232 0.16 +0.7
38,027 + EX28DRAFT_4232 0.16 -0.3
38,028 - EX28DRAFT_4232 0.17 +0.0
38,028 - EX28DRAFT_4232 0.17 -1.7
38,031 + EX28DRAFT_4232 0.17 -0.0
38,031 + EX28DRAFT_4232 0.17 -0.7
38,031 + EX28DRAFT_4232 0.17 +0.1
38,111 + EX28DRAFT_4232 0.21 -0.9
38,115 + EX28DRAFT_4232 0.21 -0.6
38,115 + EX28DRAFT_4232 0.21 -0.2
38,115 + EX28DRAFT_4232 0.21 -0.4
38,115 + EX28DRAFT_4232 0.21 -0.0
38,115 + EX28DRAFT_4232 0.21 -1.0
38,116 - EX28DRAFT_4232 0.21 -0.1
38,116 - EX28DRAFT_4232 0.21 -2.9
38,116 - EX28DRAFT_4232 0.21 +0.2
38,116 - EX28DRAFT_4232 0.21 -0.4
38,116 - EX28DRAFT_4232 0.21 -0.0
38,116 - EX28DRAFT_4232 0.21 +0.1
38,116 - EX28DRAFT_4232 0.21 +0.1
38,116 - EX28DRAFT_4232 0.21 -0.4
38,118 - EX28DRAFT_4232 0.21 +0.1
38,490 + EX28DRAFT_4232 0.40 +0.2
38,491 - EX28DRAFT_4232 0.40 -0.0
38,491 - EX28DRAFT_4232 0.40 -0.2
38,493 - EX28DRAFT_4232 0.40 -0.6
38,545 - EX28DRAFT_4232 0.43 -1.3
38,570 + EX28DRAFT_4232 0.44 -0.5
38,571 - EX28DRAFT_4232 0.44 +0.2
38,571 - EX28DRAFT_4232 0.44 +0.8
38,575 - EX28DRAFT_4232 0.44 +2.2
38,604 + EX28DRAFT_4232 0.46 -0.2
38,604 + EX28DRAFT_4232 0.46 -0.0
38,605 - EX28DRAFT_4232 0.46 -0.1
38,605 - EX28DRAFT_4232 0.46 -0.3
38,605 - EX28DRAFT_4232 0.46 +0.8
38,605 - EX28DRAFT_4232 0.46 +0.2
38,605 - EX28DRAFT_4232 0.46 -0.5
38,613 - EX28DRAFT_4232 0.46 -0.0
38,646 + EX28DRAFT_4232 0.48 -0.0
38,647 - EX28DRAFT_4232 0.48 +0.6
38,647 - EX28DRAFT_4232 0.48 -0.3
38,647 - EX28DRAFT_4232 0.48 +0.3
38,647 - EX28DRAFT_4232 0.48 -0.1
38,647 - EX28DRAFT_4232 0.48 +0.1
38,655 + EX28DRAFT_4232 0.49 -0.7
38,726 + EX28DRAFT_4232 0.52 +0.4
38,726 + EX28DRAFT_4232 0.52 +0.4
39,165 + EX28DRAFT_4232 0.75 +1.0
39,165 + EX28DRAFT_4232 0.75 -0.1
39,189 + EX28DRAFT_4232 0.76 -0.1
39,189 + EX28DRAFT_4232 0.76 -0.2
39,189 + EX28DRAFT_4232 0.76 +0.1
39,229 - EX28DRAFT_4232 0.78 +0.1
39,229 - EX28DRAFT_4232 0.78 +0.1
39,387 + EX28DRAFT_4232 0.86 +0.7
39,387 + EX28DRAFT_4232 0.86 -0.5
39,387 + EX28DRAFT_4232 0.86 +0.1
39,388 - EX28DRAFT_4232 0.86 -0.2
39,430 - EX28DRAFT_4232 0.88 +0.1
39,430 - EX28DRAFT_4232 0.88 +0.1
39,430 - EX28DRAFT_4232 0.88 -0.8
39,455 + EX28DRAFT_4232 0.89 -0.2
39,533 + +0.1
39,534 - -0.4
39,542 + -0.4
39,542 + -0.2
39,542 + +0.0
39,543 - +0.6
39,774 + -0.1
39,775 - +2.5
39,775 - -0.8
39,779 + -0.0
39,779 + +2.0
39,779 + +0.2
39,779 + +0.0
39,780 - +0.0
39,809 + -0.3
39,810 - -0.0
39,830 + EX28DRAFT_4233 0.10 -0.0
39,906 + EX28DRAFT_4233 0.34 -0.5
39,906 + EX28DRAFT_4233 0.34 -0.2
39,907 - EX28DRAFT_4233 0.35 +0.6
39,918 - EX28DRAFT_4233 0.38 -0.0
39,918 - EX28DRAFT_4233 0.38 +0.2
40,076 + EX28DRAFT_4233 0.88 +0.0
40,077 - EX28DRAFT_4233 0.89 +0.4
40,079 + EX28DRAFT_4233 0.89 +0.4
40,099 + +0.3
40,099 + +0.1
40,250 + +0.2
40,250 + -0.7
40,259 + +0.1
40,298 + EX28DRAFT_4234 0.11 -0.3
40,315 + EX28DRAFT_4234 0.12 -0.6
40,315 + EX28DRAFT_4234 0.12 +0.6
40,315 + EX28DRAFT_4234 0.12 -0.2
40,357 + EX28DRAFT_4234 0.15 +0.4
40,357 + EX28DRAFT_4234 0.15 -0.0
40,425 - EX28DRAFT_4234 0.19 -0.4
40,501 + EX28DRAFT_4234 0.24 +2.0
40,501 + EX28DRAFT_4234 0.24 -0.0
40,502 - EX28DRAFT_4234 0.24 -0.1
40,590 - EX28DRAFT_4234 0.29 -0.2
40,590 - EX28DRAFT_4234 0.29 +0.1
40,649 + EX28DRAFT_4234 0.33 -1.3
40,650 - EX28DRAFT_4234 0.33 -0.2

Or see this region's nucleotide sequence