Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4218

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4217 and EX28DRAFT_4218 are separated by 32 nucleotidesEX28DRAFT_4218 and EX28DRAFT_4219 are separated by 49 nucleotidesEX28DRAFT_4219 and EX28DRAFT_4220 are separated by 10 nucleotides EX28DRAFT_4217: EX28DRAFT_4217 - Predicted ABC-type sugar transport system, permease component, at 24,321 to 25,316 _4217 EX28DRAFT_4218: EX28DRAFT_4218 - ABC-type sugar transport system, periplasmic component, at 25,349 to 26,290 _4218 EX28DRAFT_4219: EX28DRAFT_4219 - ABC-type sugar transport system, auxiliary component, at 26,340 to 27,026 _4219 EX28DRAFT_4220: EX28DRAFT_4220 - ketose-bisphosphate aldolase, at 27,037 to 27,897 _4220 Position (kb) 25 26 27Strain fitness (log2 ratio) -2 -1 0 1at 24.744 kb on + strand, within EX28DRAFT_4217at 24.744 kb on + strand, within EX28DRAFT_4217at 24.745 kb on - strand, within EX28DRAFT_4217at 24.768 kb on + strand, within EX28DRAFT_4217at 24.797 kb on + strand, within EX28DRAFT_4217at 24.797 kb on + strand, within EX28DRAFT_4217at 24.834 kb on + strand, within EX28DRAFT_4217at 24.835 kb on - strand, within EX28DRAFT_4217at 24.835 kb on - strand, within EX28DRAFT_4217at 24.835 kb on - strand, within EX28DRAFT_4217at 24.930 kb on + strand, within EX28DRAFT_4217at 24.930 kb on + strand, within EX28DRAFT_4217at 24.931 kb on - strand, within EX28DRAFT_4217at 24.931 kb on - strand, within EX28DRAFT_4217at 24.975 kb on - strand, within EX28DRAFT_4217at 25.003 kb on - strand, within EX28DRAFT_4217at 25.007 kb on + strand, within EX28DRAFT_4217at 25.007 kb on + strand, within EX28DRAFT_4217at 25.007 kb on + strand, within EX28DRAFT_4217at 25.008 kb on - strand, within EX28DRAFT_4217at 25.227 kb on + strandat 25.267 kb on + strandat 25.287 kb on + strandat 25.288 kb on - strandat 25.314 kb on + strandat 25.314 kb on + strandat 25.315 kb on - strandat 25.329 kb on - strandat 25.343 kb on + strandat 25.343 kb on + strandat 25.345 kb on - strandat 25.346 kb on + strandat 25.346 kb on + strandat 25.346 kb on + strandat 25.346 kb on + strandat 25.346 kb on + strandat 25.347 kb on - strandat 25.347 kb on - strandat 25.347 kb on - strandat 25.348 kb on + strandat 25.348 kb on + strandat 25.348 kb on + strandat 25.349 kb on - strandat 25.768 kb on + strand, within EX28DRAFT_4218at 25.769 kb on - strand, within EX28DRAFT_4218at 25.769 kb on - strand, within EX28DRAFT_4218at 25.769 kb on - strand, within EX28DRAFT_4218at 25.769 kb on - strand, within EX28DRAFT_4218at 25.772 kb on + strand, within EX28DRAFT_4218at 25.772 kb on + strand, within EX28DRAFT_4218at 25.773 kb on - strand, within EX28DRAFT_4218at 25.773 kb on - strand, within EX28DRAFT_4218at 25.949 kb on - strand, within EX28DRAFT_4218at 26.267 kb on + strandat 26.267 kb on + strandat 26.267 kb on + strandat 26.267 kb on + strandat 26.267 kb on + strandat 26.268 kb on - strandat 26.268 kb on - strandat 26.268 kb on - strandat 26.710 kb on + strand, within EX28DRAFT_4219at 26.710 kb on + strand, within EX28DRAFT_4219at 26.710 kb on + strand, within EX28DRAFT_4219at 26.956 kb on - strand, within EX28DRAFT_4219at 26.957 kb on + strand, within EX28DRAFT_4219at 26.957 kb on + strand, within EX28DRAFT_4219at 26.957 kb on + strand, within EX28DRAFT_4219at 27.007 kb on - strandat 27.007 kb on - strandat 27.024 kb on + strandat 27.025 kb on - strandat 27.025 kb on - strandat 27.025 kb on - strandat 27.032 kb on - strandat 27.032 kb on - strandat 27.198 kb on + strand, within EX28DRAFT_4220at 27.199 kb on - strand, within EX28DRAFT_4220at 27.202 kb on + strand, within EX28DRAFT_4220at 27.202 kb on + strand, within EX28DRAFT_4220at 27.202 kb on + strand, within EX28DRAFT_4220at 27.202 kb on + strand, within EX28DRAFT_4220at 27.203 kb on - strand, within EX28DRAFT_4220

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
24,744 + EX28DRAFT_4217 0.42 -1.1
24,744 + EX28DRAFT_4217 0.42 +0.4
24,745 - EX28DRAFT_4217 0.43 -0.5
24,768 + EX28DRAFT_4217 0.45 +0.1
24,797 + EX28DRAFT_4217 0.48 +0.3
24,797 + EX28DRAFT_4217 0.48 -0.2
24,834 + EX28DRAFT_4217 0.52 -0.5
24,835 - EX28DRAFT_4217 0.52 -0.3
24,835 - EX28DRAFT_4217 0.52 -2.5
24,835 - EX28DRAFT_4217 0.52 +0.2
24,930 + EX28DRAFT_4217 0.61 -0.6
24,930 + EX28DRAFT_4217 0.61 +0.1
24,931 - EX28DRAFT_4217 0.61 -0.4
24,931 - EX28DRAFT_4217 0.61 -0.4
24,975 - EX28DRAFT_4217 0.66 -0.2
25,003 - EX28DRAFT_4217 0.68 +0.2
25,007 + EX28DRAFT_4217 0.69 -0.2
25,007 + EX28DRAFT_4217 0.69 -0.3
25,007 + EX28DRAFT_4217 0.69 +0.2
25,008 - EX28DRAFT_4217 0.69 +0.3
25,227 + -0.4
25,267 + -0.3
25,287 + -1.2
25,288 - +0.0
25,314 + +0.6
25,314 + -0.4
25,315 - +1.0
25,329 - -0.1
25,343 + -0.7
25,343 + +0.2
25,345 - -0.4
25,346 + -0.0
25,346 + +0.2
25,346 + +0.2
25,346 + -1.1
25,346 + -0.0
25,347 - -0.1
25,347 - -1.1
25,347 - +0.0
25,348 + +0.3
25,348 + -0.6
25,348 + +0.7
25,349 - -0.3
25,768 + EX28DRAFT_4218 0.44 -0.6
25,769 - EX28DRAFT_4218 0.45 -0.1
25,769 - EX28DRAFT_4218 0.45 -0.3
25,769 - EX28DRAFT_4218 0.45 -0.4
25,769 - EX28DRAFT_4218 0.45 -0.2
25,772 + EX28DRAFT_4218 0.45 +0.7
25,772 + EX28DRAFT_4218 0.45 -1.0
25,773 - EX28DRAFT_4218 0.45 -1.3
25,773 - EX28DRAFT_4218 0.45 +0.1
25,949 - EX28DRAFT_4218 0.64 -0.6
26,267 + -0.5
26,267 + -0.3
26,267 + +1.7
26,267 + -0.3
26,267 + -1.3
26,268 - +0.2
26,268 - +1.5
26,268 - +0.6
26,710 + EX28DRAFT_4219 0.54 -0.0
26,710 + EX28DRAFT_4219 0.54 -0.3
26,710 + EX28DRAFT_4219 0.54 +0.1
26,956 - EX28DRAFT_4219 0.90 +0.3
26,957 + EX28DRAFT_4219 0.90 -2.4
26,957 + EX28DRAFT_4219 0.90 -0.5
26,957 + EX28DRAFT_4219 0.90 +0.6
27,007 - +1.0
27,007 - +1.0
27,024 + -0.0
27,025 - -0.1
27,025 - -0.1
27,025 - +0.5
27,032 - +1.0
27,032 - +0.7
27,198 + EX28DRAFT_4220 0.19 -0.1
27,199 - EX28DRAFT_4220 0.19 -0.9
27,202 + EX28DRAFT_4220 0.19 +1.0
27,202 + EX28DRAFT_4220 0.19 +0.9
27,202 + EX28DRAFT_4220 0.19 -0.0
27,202 + EX28DRAFT_4220 0.19 +1.4
27,203 - EX28DRAFT_4220 0.19 +0.3

Or see this region's nucleotide sequence