Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4168 and EX28DRAFT_4169 are separated by 21 nucleotides EX28DRAFT_4169 and EX28DRAFT_4170 are separated by 86 nucleotides
EX28DRAFT_4168: EX28DRAFT_4168 - SIR2-like domain, at 149,144 to 152,260
_4168
EX28DRAFT_4169: EX28DRAFT_4169 - glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, at 152,282 to 152,845
_4169
EX28DRAFT_4170: EX28DRAFT_4170 - transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family, at 152,932 to 154,152
_4170
Position (kb)
152
153 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 151.282 kb on + strand, within EX28DRAFT_4168 at 151.282 kb on + strand, within EX28DRAFT_4168 at 151.282 kb on + strand, within EX28DRAFT_4168 at 151.282 kb on + strand, within EX28DRAFT_4168 at 151.282 kb on + strand, within EX28DRAFT_4168 at 151.288 kb on + strand, within EX28DRAFT_4168 at 151.289 kb on - strand, within EX28DRAFT_4168 at 151.303 kb on - strand, within EX28DRAFT_4168 at 151.507 kb on + strand, within EX28DRAFT_4168 at 151.660 kb on + strand, within EX28DRAFT_4168 at 151.660 kb on + strand, within EX28DRAFT_4168 at 151.661 kb on - strand, within EX28DRAFT_4168 at 151.703 kb on - strand, within EX28DRAFT_4168 at 151.703 kb on - strand, within EX28DRAFT_4168 at 151.728 kb on - strand, within EX28DRAFT_4168 at 151.728 kb on - strand, within EX28DRAFT_4168 at 151.754 kb on + strand, within EX28DRAFT_4168 at 151.754 kb on + strand, within EX28DRAFT_4168 at 151.803 kb on + strand, within EX28DRAFT_4168 at 151.804 kb on - strand, within EX28DRAFT_4168 at 151.887 kb on + strand, within EX28DRAFT_4168 at 151.891 kb on + strand, within EX28DRAFT_4168 at 151.891 kb on + strand, within EX28DRAFT_4168 at 151.892 kb on - strand, within EX28DRAFT_4168 at 151.921 kb on + strand, within EX28DRAFT_4168 at 151.934 kb on - strand, within EX28DRAFT_4168 at 151.942 kb on + strand, within EX28DRAFT_4168 at 151.942 kb on + strand, within EX28DRAFT_4168 at 152.007 kb on + strand at 152.010 kb on + strand at 152.042 kb on + strand at 152.043 kb on - strand at 152.044 kb on + strand at 152.064 kb on + strand at 152.064 kb on + strand at 152.065 kb on - strand at 152.065 kb on - strand at 152.076 kb on + strand at 152.076 kb on + strand at 152.098 kb on - strand at 152.218 kb on + strand at 152.219 kb on - strand at 152.227 kb on + strand at 152.240 kb on + strand at 152.254 kb on + strand at 152.254 kb on + strand at 152.255 kb on - strand at 152.278 kb on + strand at 152.278 kb on + strand at 152.300 kb on - strand at 152.300 kb on - strand at 152.300 kb on - strand at 152.303 kb on + strand at 152.303 kb on + strand at 152.304 kb on - strand at 152.304 kb on - strand at 152.304 kb on - strand at 152.304 kb on - strand at 152.444 kb on - strand, within EX28DRAFT_4169 at 152.486 kb on + strand, within EX28DRAFT_4169 at 152.487 kb on - strand, within EX28DRAFT_4169 at 152.847 kb on + strand at 152.879 kb on - strand at 152.892 kb on - strand at 152.913 kb on + strand at 152.992 kb on + strand at 153.061 kb on + strand, within EX28DRAFT_4170 at 153.061 kb on + strand, within EX28DRAFT_4170 at 153.062 kb on - strand, within EX28DRAFT_4170 at 153.293 kb on - strand, within EX28DRAFT_4170 at 153.653 kb on - strand, within EX28DRAFT_4170 at 153.654 kb on + strand, within EX28DRAFT_4170 at 153.654 kb on + strand, within EX28DRAFT_4170 at 153.655 kb on - strand, within EX28DRAFT_4170 at 153.655 kb on - strand, within EX28DRAFT_4170 at 153.661 kb on + strand, within EX28DRAFT_4170 at 153.835 kb on - strand, within EX28DRAFT_4170 at 153.835 kb on - strand, within EX28DRAFT_4170
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 151,282 + EX28DRAFT_4168 0.69 +1.1 151,282 + EX28DRAFT_4168 0.69 -0.0 151,282 + EX28DRAFT_4168 0.69 +0.6 151,282 + EX28DRAFT_4168 0.69 -0.7 151,282 + EX28DRAFT_4168 0.69 -0.9 151,288 + EX28DRAFT_4168 0.69 +0.0 151,289 - EX28DRAFT_4168 0.69 -0.0 151,303 - EX28DRAFT_4168 0.69 -2.6 151,507 + EX28DRAFT_4168 0.76 +0.1 151,660 + EX28DRAFT_4168 0.81 -2.3 151,660 + EX28DRAFT_4168 0.81 -0.9 151,661 - EX28DRAFT_4168 0.81 -0.2 151,703 - EX28DRAFT_4168 0.82 -0.1 151,703 - EX28DRAFT_4168 0.82 -0.4 151,728 - EX28DRAFT_4168 0.83 -0.1 151,728 - EX28DRAFT_4168 0.83 +1.0 151,754 + EX28DRAFT_4168 0.84 +0.1 151,754 + EX28DRAFT_4168 0.84 +0.1 151,803 + EX28DRAFT_4168 0.85 +0.2 151,804 - EX28DRAFT_4168 0.85 -1.8 151,887 + EX28DRAFT_4168 0.88 +0.8 151,891 + EX28DRAFT_4168 0.88 +0.2 151,891 + EX28DRAFT_4168 0.88 -0.9 151,892 - EX28DRAFT_4168 0.88 -1.1 151,921 + EX28DRAFT_4168 0.89 +0.7 151,934 - EX28DRAFT_4168 0.90 -0.2 151,942 + EX28DRAFT_4168 0.90 +0.5 151,942 + EX28DRAFT_4168 0.90 +0.7 152,007 + -0.1 152,010 + -0.2 152,042 + -0.9 152,043 - +0.4 152,044 + +0.6 152,064 + +0.0 152,064 + +0.1 152,065 - +0.6 152,065 - -0.7 152,076 + -0.1 152,076 + -0.7 152,098 - +0.2 152,218 + -0.3 152,219 - +0.8 152,227 + +0.6 152,240 + +0.0 152,254 + -0.3 152,254 + +0.2 152,255 - +0.3 152,278 + -0.2 152,278 + -0.6 152,300 - -0.1 152,300 - +0.2 152,300 - -0.7 152,303 + -0.1 152,303 + +0.1 152,304 - -0.5 152,304 - -0.4 152,304 - +0.5 152,304 - +0.5 152,444 - EX28DRAFT_4169 0.29 -0.1 152,486 + EX28DRAFT_4169 0.36 -0.2 152,487 - EX28DRAFT_4169 0.36 -0.0 152,847 + -0.7 152,879 - -2.1 152,892 - -0.6 152,913 + -0.6 152,992 + -0.5 153,061 + EX28DRAFT_4170 0.11 -1.1 153,061 + EX28DRAFT_4170 0.11 -2.3 153,062 - EX28DRAFT_4170 0.11 -3.7 153,293 - EX28DRAFT_4170 0.30 -4.0 153,653 - EX28DRAFT_4170 0.59 -2.3 153,654 + EX28DRAFT_4170 0.59 -2.0 153,654 + EX28DRAFT_4170 0.59 -3.3 153,655 - EX28DRAFT_4170 0.59 -1.4 153,655 - EX28DRAFT_4170 0.59 -1.4 153,661 + EX28DRAFT_4170 0.60 -1.5 153,835 - EX28DRAFT_4170 0.74 -2.5 153,835 - EX28DRAFT_4170 0.74 -4.2
Or see this region's nucleotide sequence