Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4128 and EX28DRAFT_4129 are separated by 61 nucleotides EX28DRAFT_4129 and EX28DRAFT_4130 are separated by 36 nucleotides EX28DRAFT_4130 and EX28DRAFT_4131 are separated by 111 nucleotides
EX28DRAFT_4128: EX28DRAFT_4128 - IscR-regulated protein YhgI, at 108,911 to 109,486
_4128
EX28DRAFT_4129: EX28DRAFT_4129 - Predicted amidophosphoribosyltransferases, at 109,548 to 110,231
_4129
EX28DRAFT_4130: EX28DRAFT_4130 - pimelyl-[acyl-carrier protein] methyl ester esterase, at 110,268 to 111,041
_4130
EX28DRAFT_4131: EX28DRAFT_4131 - Protein of unknown function (DUF1471), at 111,153 to 111,422
_4131
Position (kb)
109
110
111 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 108.759 kb on + strand at 108.761 kb on + strand at 108.762 kb on - strand at 108.762 kb on - strand at 108.817 kb on + strand at 108.912 kb on + strand at 108.913 kb on - strand at 108.916 kb on - strand at 108.919 kb on - strand at 108.919 kb on - strand at 109.360 kb on - strand, within EX28DRAFT_4128 at 109.478 kb on - strand at 109.487 kb on - strand at 109.556 kb on + strand at 109.572 kb on + strand at 109.573 kb on - strand at 109.573 kb on - strand at 109.573 kb on - strand at 109.770 kb on - strand, within EX28DRAFT_4129 at 109.770 kb on - strand, within EX28DRAFT_4129 at 109.868 kb on - strand, within EX28DRAFT_4129 at 109.870 kb on - strand, within EX28DRAFT_4129 at 110.023 kb on + strand, within EX28DRAFT_4129 at 110.024 kb on - strand, within EX28DRAFT_4129 at 110.024 kb on - strand, within EX28DRAFT_4129 at 110.262 kb on + strand at 110.262 kb on + strand at 110.262 kb on + strand at 110.263 kb on - strand at 110.350 kb on + strand, within EX28DRAFT_4130 at 110.350 kb on + strand, within EX28DRAFT_4130 at 110.351 kb on - strand, within EX28DRAFT_4130 at 110.362 kb on + strand, within EX28DRAFT_4130 at 110.362 kb on + strand, within EX28DRAFT_4130 at 110.362 kb on + strand, within EX28DRAFT_4130 at 110.363 kb on - strand, within EX28DRAFT_4130 at 110.363 kb on - strand, within EX28DRAFT_4130 at 110.363 kb on - strand, within EX28DRAFT_4130 at 110.687 kb on - strand, within EX28DRAFT_4130 at 110.870 kb on + strand, within EX28DRAFT_4130 at 110.874 kb on + strand, within EX28DRAFT_4130 at 110.874 kb on + strand, within EX28DRAFT_4130 at 110.875 kb on - strand, within EX28DRAFT_4130 at 110.875 kb on - strand, within EX28DRAFT_4130 at 110.875 kb on - strand, within EX28DRAFT_4130 at 110.875 kb on - strand, within EX28DRAFT_4130 at 110.981 kb on + strand at 110.981 kb on + strand at 110.982 kb on - strand at 111.085 kb on - strand at 111.114 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 108,759 + -0.3 108,761 + -0.1 108,762 - -2.3 108,762 - -0.2 108,817 + -1.0 108,912 + +0.2 108,913 - -0.3 108,916 - -1.1 108,919 - +0.1 108,919 - -0.6 109,360 - EX28DRAFT_4128 0.78 -0.5 109,478 - -4.5 109,487 - -1.5 109,556 + +0.5 109,572 + +0.3 109,573 - -0.6 109,573 - +0.4 109,573 - +0.1 109,770 - EX28DRAFT_4129 0.32 -1.0 109,770 - EX28DRAFT_4129 0.32 -0.3 109,868 - EX28DRAFT_4129 0.47 -0.2 109,870 - EX28DRAFT_4129 0.47 -0.4 110,023 + EX28DRAFT_4129 0.69 +0.5 110,024 - EX28DRAFT_4129 0.70 +0.2 110,024 - EX28DRAFT_4129 0.70 +0.4 110,262 + +0.1 110,262 + +0.1 110,262 + +0.2 110,263 - +0.2 110,350 + EX28DRAFT_4130 0.11 +0.0 110,350 + EX28DRAFT_4130 0.11 -0.5 110,351 - EX28DRAFT_4130 0.11 +0.5 110,362 + EX28DRAFT_4130 0.12 +0.4 110,362 + EX28DRAFT_4130 0.12 -0.6 110,362 + EX28DRAFT_4130 0.12 -0.2 110,363 - EX28DRAFT_4130 0.12 -0.5 110,363 - EX28DRAFT_4130 0.12 +0.2 110,363 - EX28DRAFT_4130 0.12 +0.3 110,687 - EX28DRAFT_4130 0.54 +0.1 110,870 + EX28DRAFT_4130 0.78 +1.5 110,874 + EX28DRAFT_4130 0.78 -2.2 110,874 + EX28DRAFT_4130 0.78 -0.1 110,875 - EX28DRAFT_4130 0.78 -0.7 110,875 - EX28DRAFT_4130 0.78 -0.2 110,875 - EX28DRAFT_4130 0.78 +0.4 110,875 - EX28DRAFT_4130 0.78 +0.2 110,981 + -0.4 110,981 + -0.3 110,982 - -0.9 111,085 - +0.1 111,114 + -0.5
Or see this region's nucleotide sequence