Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4106

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4104 and EX28DRAFT_4105 overlap by 4 nucleotidesEX28DRAFT_4105 and EX28DRAFT_4106 are separated by 68 nucleotidesEX28DRAFT_4106 and EX28DRAFT_4107 are separated by 69 nucleotidesEX28DRAFT_4107 and EX28DRAFT_4108 are separated by 337 nucleotides EX28DRAFT_4104: EX28DRAFT_4104 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 76,336 to 77,151 _4104 EX28DRAFT_4105: EX28DRAFT_4105 - Beta-ketoacyl synthase, N-terminal domain, at 77,148 to 77,870 _4105 EX28DRAFT_4106: EX28DRAFT_4106 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 77,939 to 79,003 _4106 EX28DRAFT_4107: EX28DRAFT_4107 - hypothetical protein, at 79,073 to 79,462 _4107 EX28DRAFT_4108: EX28DRAFT_4108 - Predicted permease, at 79,800 to 80,849 _4108 Position (kb) 77 78 79 80Strain fitness (log2 ratio) -1 0 1 2 3at 77.327 kb on - strand, within EX28DRAFT_4105at 77.445 kb on + strand, within EX28DRAFT_4105at 77.446 kb on - strand, within EX28DRAFT_4105at 77.446 kb on - strand, within EX28DRAFT_4105at 77.480 kb on + strand, within EX28DRAFT_4105at 77.480 kb on + strand, within EX28DRAFT_4105at 77.481 kb on - strand, within EX28DRAFT_4105at 77.523 kb on - strand, within EX28DRAFT_4105at 77.872 kb on + strandat 77.873 kb on - strandat 77.891 kb on + strandat 77.891 kb on + strandat 77.891 kb on + strandat 77.930 kb on + strandat 77.931 kb on - strandat 77.940 kb on + strandat 77.966 kb on + strandat 77.966 kb on + strandat 77.971 kb on + strandat 77.971 kb on + strandat 77.972 kb on - strandat 77.972 kb on - strandat 78.037 kb on - strandat 78.065 kb on - strand, within EX28DRAFT_4106at 78.067 kb on + strand, within EX28DRAFT_4106at 78.067 kb on + strand, within EX28DRAFT_4106at 78.068 kb on - strand, within EX28DRAFT_4106at 78.068 kb on - strand, within EX28DRAFT_4106at 78.079 kb on + strand, within EX28DRAFT_4106at 78.079 kb on + strand, within EX28DRAFT_4106at 78.079 kb on + strand, within EX28DRAFT_4106at 78.080 kb on - strand, within EX28DRAFT_4106at 78.090 kb on + strand, within EX28DRAFT_4106at 78.485 kb on + strand, within EX28DRAFT_4106at 78.486 kb on - strand, within EX28DRAFT_4106at 78.487 kb on + strand, within EX28DRAFT_4106at 78.487 kb on + strand, within EX28DRAFT_4106at 78.487 kb on + strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.490 kb on - strand, within EX28DRAFT_4106at 78.490 kb on - strand, within EX28DRAFT_4106at 78.522 kb on + strand, within EX28DRAFT_4106at 78.523 kb on - strand, within EX28DRAFT_4106at 78.526 kb on - strand, within EX28DRAFT_4106at 78.660 kb on - strand, within EX28DRAFT_4106at 78.694 kb on + strand, within EX28DRAFT_4106at 78.804 kb on - strand, within EX28DRAFT_4106at 79.012 kb on - strandat 79.071 kb on + strandat 79.072 kb on - strandat 79.191 kb on + strand, within EX28DRAFT_4107at 79.191 kb on + strand, within EX28DRAFT_4107at 79.268 kb on - strand, within EX28DRAFT_4107at 79.364 kb on + strand, within EX28DRAFT_4107at 79.369 kb on + strand, within EX28DRAFT_4107at 79.718 kb on + strandat 79.761 kb on - strandat 79.787 kb on - strandat 79.787 kb on - strandat 79.886 kb on + strandat 79.891 kb on - strandat 79.891 kb on - strandat 79.953 kb on + strand, within EX28DRAFT_4108at 79.954 kb on - strand, within EX28DRAFT_4108at 79.959 kb on + strand, within EX28DRAFT_4108at 79.960 kb on - strand, within EX28DRAFT_4108at 79.965 kb on + strand, within EX28DRAFT_4108at 79.965 kb on + strand, within EX28DRAFT_4108at 79.965 kb on + strand, within EX28DRAFT_4108

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
77,327 - EX28DRAFT_4105 0.25 +1.0
77,445 + EX28DRAFT_4105 0.41 +0.2
77,446 - EX28DRAFT_4105 0.41 +0.1
77,446 - EX28DRAFT_4105 0.41 -0.5
77,480 + EX28DRAFT_4105 0.46 +0.3
77,480 + EX28DRAFT_4105 0.46 +0.1
77,481 - EX28DRAFT_4105 0.46 -0.7
77,523 - EX28DRAFT_4105 0.52 +0.4
77,872 + -1.3
77,873 - +0.4
77,891 + -0.1
77,891 + +0.0
77,891 + +0.1
77,930 + -0.6
77,931 - -0.0
77,940 + +0.2
77,966 + +0.4
77,966 + +0.2
77,971 + -0.3
77,971 + -0.3
77,972 - -0.6
77,972 - +0.4
78,037 - -0.1
78,065 - EX28DRAFT_4106 0.12 -0.4
78,067 + EX28DRAFT_4106 0.12 -0.1
78,067 + EX28DRAFT_4106 0.12 -0.5
78,068 - EX28DRAFT_4106 0.12 +0.2
78,068 - EX28DRAFT_4106 0.12 +0.5
78,079 + EX28DRAFT_4106 0.13 +0.5
78,079 + EX28DRAFT_4106 0.13 +0.2
78,079 + EX28DRAFT_4106 0.13 +0.5
78,080 - EX28DRAFT_4106 0.13 +0.1
78,090 + EX28DRAFT_4106 0.14 -0.2
78,485 + EX28DRAFT_4106 0.51 +3.0
78,486 - EX28DRAFT_4106 0.51 +0.7
78,487 + EX28DRAFT_4106 0.51 -0.8
78,487 + EX28DRAFT_4106 0.51 -0.3
78,487 + EX28DRAFT_4106 0.51 +1.2
78,488 - EX28DRAFT_4106 0.52 +0.2
78,488 - EX28DRAFT_4106 0.52 +0.5
78,488 - EX28DRAFT_4106 0.52 +0.1
78,488 - EX28DRAFT_4106 0.52 -0.0
78,488 - EX28DRAFT_4106 0.52 +0.1
78,488 - EX28DRAFT_4106 0.52 -0.4
78,488 - EX28DRAFT_4106 0.52 -0.6
78,488 - EX28DRAFT_4106 0.52 +1.5
78,490 - EX28DRAFT_4106 0.52 +0.5
78,490 - EX28DRAFT_4106 0.52 -0.1
78,522 + EX28DRAFT_4106 0.55 -0.2
78,523 - EX28DRAFT_4106 0.55 +0.6
78,526 - EX28DRAFT_4106 0.55 -0.2
78,660 - EX28DRAFT_4106 0.68 -0.4
78,694 + EX28DRAFT_4106 0.71 +0.8
78,804 - EX28DRAFT_4106 0.81 +1.4
79,012 - -0.3
79,071 + -0.3
79,072 - +0.1
79,191 + EX28DRAFT_4107 0.30 +0.2
79,191 + EX28DRAFT_4107 0.30 +0.3
79,268 - EX28DRAFT_4107 0.50 +0.1
79,364 + EX28DRAFT_4107 0.75 +0.2
79,369 + EX28DRAFT_4107 0.76 -0.1
79,718 + +0.3
79,761 - +0.5
79,787 - -0.0
79,787 - +0.2
79,886 + +0.3
79,891 - -1.7
79,891 - -0.2
79,953 + EX28DRAFT_4108 0.15 -0.7
79,954 - EX28DRAFT_4108 0.15 -0.5
79,959 + EX28DRAFT_4108 0.15 +0.1
79,960 - EX28DRAFT_4108 0.15 -0.1
79,965 + EX28DRAFT_4108 0.16 -0.2
79,965 + EX28DRAFT_4108 0.16 +0.3
79,965 + EX28DRAFT_4108 0.16 +0.6

Or see this region's nucleotide sequence