Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3930 and EX28DRAFT_3931 are separated by 148 nucleotides EX28DRAFT_3931 and EX28DRAFT_3932 are separated by 186 nucleotides EX28DRAFT_3932 and EX28DRAFT_3933 are separated by 148 nucleotides
EX28DRAFT_3930: EX28DRAFT_3930 - lipoprotein, YaeC family, at 138,681 to 139,481
_3930
EX28DRAFT_3931: EX28DRAFT_3931 - Predicted acetyltransferase, at 139,630 to 140,049
_3931
EX28DRAFT_3932: EX28DRAFT_3932 - transcriptional regulator, TetR family, at 140,236 to 140,805
_3932
EX28DRAFT_3933: EX28DRAFT_3933 - RND family efflux transporter, MFP subunit, at 140,954 to 142,075
_3933
Position (kb)
139
140
141 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 138.818 kb on - strand, within EX28DRAFT_3930 at 138.883 kb on + strand, within EX28DRAFT_3930 at 138.883 kb on + strand, within EX28DRAFT_3930 at 138.883 kb on + strand, within EX28DRAFT_3930 at 138.883 kb on + strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.887 kb on + strand, within EX28DRAFT_3930 at 138.887 kb on + strand, within EX28DRAFT_3930 at 138.888 kb on - strand, within EX28DRAFT_3930 at 138.888 kb on - strand, within EX28DRAFT_3930 at 138.990 kb on - strand, within EX28DRAFT_3930 at 139.195 kb on + strand, within EX28DRAFT_3930 at 139.195 kb on + strand, within EX28DRAFT_3930 at 139.196 kb on - strand, within EX28DRAFT_3930 at 139.196 kb on - strand, within EX28DRAFT_3930 at 139.196 kb on - strand, within EX28DRAFT_3930 at 139.328 kb on - strand, within EX28DRAFT_3930 at 139.328 kb on - strand, within EX28DRAFT_3930 at 139.397 kb on + strand, within EX28DRAFT_3930 at 139.455 kb on + strand at 139.508 kb on + strand at 139.516 kb on - strand at 139.516 kb on - strand at 139.518 kb on - strand at 139.570 kb on - strand at 139.574 kb on + strand at 139.577 kb on - strand at 139.632 kb on - strand at 139.647 kb on + strand at 139.648 kb on - strand at 139.649 kb on + strand at 139.649 kb on + strand at 139.649 kb on + strand at 139.650 kb on - strand at 139.650 kb on - strand at 139.650 kb on - strand at 139.670 kb on + strand at 139.671 kb on - strand at 139.977 kb on + strand, within EX28DRAFT_3931 at 139.978 kb on - strand, within EX28DRAFT_3931 at 139.980 kb on - strand, within EX28DRAFT_3931 at 139.980 kb on - strand, within EX28DRAFT_3931 at 139.999 kb on + strand, within EX28DRAFT_3931 at 140.024 kb on - strand at 140.028 kb on + strand at 140.028 kb on + strand at 140.029 kb on - strand at 140.029 kb on - strand at 140.050 kb on - strand at 140.050 kb on - strand at 140.050 kb on - strand at 140.061 kb on + strand at 140.152 kb on + strand at 140.668 kb on - strand, within EX28DRAFT_3932 at 140.735 kb on + strand, within EX28DRAFT_3932 at 140.757 kb on - strand at 140.757 kb on - strand at 140.768 kb on - strand at 140.780 kb on + strand at 140.785 kb on - strand at 140.804 kb on - strand at 140.818 kb on - strand at 140.835 kb on - strand at 140.891 kb on - strand at 140.894 kb on + strand at 140.895 kb on - strand at 140.910 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 138,818 - EX28DRAFT_3930 0.17 +1.0 138,883 + EX28DRAFT_3930 0.25 -0.0 138,883 + EX28DRAFT_3930 0.25 +0.1 138,883 + EX28DRAFT_3930 0.25 +0.1 138,883 + EX28DRAFT_3930 0.25 +0.1 138,884 - EX28DRAFT_3930 0.25 -0.0 138,884 - EX28DRAFT_3930 0.25 +0.1 138,884 - EX28DRAFT_3930 0.25 -0.4 138,884 - EX28DRAFT_3930 0.25 +0.2 138,884 - EX28DRAFT_3930 0.25 +0.9 138,884 - EX28DRAFT_3930 0.25 -0.0 138,884 - EX28DRAFT_3930 0.25 -0.3 138,884 - EX28DRAFT_3930 0.25 +0.2 138,887 + EX28DRAFT_3930 0.26 +0.5 138,887 + EX28DRAFT_3930 0.26 +0.5 138,888 - EX28DRAFT_3930 0.26 -0.0 138,888 - EX28DRAFT_3930 0.26 -0.1 138,990 - EX28DRAFT_3930 0.39 -0.3 139,195 + EX28DRAFT_3930 0.64 +0.4 139,195 + EX28DRAFT_3930 0.64 -0.8 139,196 - EX28DRAFT_3930 0.64 +0.9 139,196 - EX28DRAFT_3930 0.64 +0.1 139,196 - EX28DRAFT_3930 0.64 +0.2 139,328 - EX28DRAFT_3930 0.81 +0.2 139,328 - EX28DRAFT_3930 0.81 -0.3 139,397 + EX28DRAFT_3930 0.89 -0.4 139,455 + -2.5 139,508 + -0.7 139,516 - +0.1 139,516 - -0.1 139,518 - +0.1 139,570 - +0.4 139,574 + -0.1 139,577 - +0.3 139,632 - +0.5 139,647 + +0.7 139,648 - +2.0 139,649 + +0.2 139,649 + +0.2 139,649 + -0.8 139,650 - +0.6 139,650 - -0.2 139,650 - -0.1 139,670 + +0.1 139,671 - -0.0 139,977 + EX28DRAFT_3931 0.83 -0.6 139,978 - EX28DRAFT_3931 0.83 +0.9 139,980 - EX28DRAFT_3931 0.83 -0.4 139,980 - EX28DRAFT_3931 0.83 -0.1 139,999 + EX28DRAFT_3931 0.88 -0.6 140,024 - +0.3 140,028 + -0.2 140,028 + +0.0 140,029 - -0.2 140,029 - -0.9 140,050 - +0.5 140,050 - +0.3 140,050 - -0.3 140,061 + +2.0 140,152 + -0.6 140,668 - EX28DRAFT_3932 0.76 -0.5 140,735 + EX28DRAFT_3932 0.88 -0.0 140,757 - -0.3 140,757 - -0.4 140,768 - -0.0 140,780 + -0.7 140,785 - -1.1 140,804 - -0.4 140,818 - -0.7 140,835 - +0.3 140,891 - -0.2 140,894 + -0.1 140,895 - +0.1 140,910 + -0.3
Or see this region's nucleotide sequence