Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3867

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3866 and EX28DRAFT_3867 are separated by 205 nucleotidesEX28DRAFT_3867 and EX28DRAFT_3868 are separated by 15 nucleotidesEX28DRAFT_3868 and EX28DRAFT_3869 are separated by 27 nucleotides EX28DRAFT_3866: EX28DRAFT_3866 - Glycosyltransferases involved in cell wall biogenesis, at 75,366 to 76,166 _3866 EX28DRAFT_3867: EX28DRAFT_3867 - Glycosyl transferases group 1, at 76,372 to 77,577 _3867 EX28DRAFT_3868: EX28DRAFT_3868 - hypothetical protein, at 77,593 to 78,507 _3868 EX28DRAFT_3869: EX28DRAFT_3869 - L-threonine 3-dehydrogenase (EC 1.1.1.103), at 78,535 to 79,563 _3869 Position (kb) 76 77 78Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 75.446 kb on - strand, within EX28DRAFT_3866at 75.458 kb on + strand, within EX28DRAFT_3866at 75.460 kb on + strand, within EX28DRAFT_3866at 75.460 kb on + strand, within EX28DRAFT_3866at 75.612 kb on - strand, within EX28DRAFT_3866at 75.612 kb on - strand, within EX28DRAFT_3866at 75.656 kb on + strand, within EX28DRAFT_3866at 75.657 kb on - strand, within EX28DRAFT_3866at 75.666 kb on + strand, within EX28DRAFT_3866at 75.667 kb on - strand, within EX28DRAFT_3866at 75.667 kb on - strand, within EX28DRAFT_3866at 75.731 kb on + strand, within EX28DRAFT_3866at 75.791 kb on - strand, within EX28DRAFT_3866at 75.835 kb on - strand, within EX28DRAFT_3866at 75.882 kb on + strand, within EX28DRAFT_3866at 75.913 kb on - strand, within EX28DRAFT_3866at 76.004 kb on - strand, within EX28DRAFT_3866at 76.207 kb on - strandat 76.209 kb on + strandat 76.210 kb on - strandat 76.257 kb on + strandat 76.315 kb on + strandat 76.483 kb on - strandat 76.623 kb on + strand, within EX28DRAFT_3867at 76.624 kb on - strand, within EX28DRAFT_3867at 76.662 kb on + strand, within EX28DRAFT_3867at 76.753 kb on - strand, within EX28DRAFT_3867at 76.759 kb on - strand, within EX28DRAFT_3867at 76.957 kb on - strand, within EX28DRAFT_3867at 77.058 kb on + strand, within EX28DRAFT_3867at 77.261 kb on - strand, within EX28DRAFT_3867at 77.268 kb on + strand, within EX28DRAFT_3867at 77.269 kb on - strand, within EX28DRAFT_3867at 77.269 kb on - strand, within EX28DRAFT_3867at 77.284 kb on - strand, within EX28DRAFT_3867at 77.457 kb on + strandat 77.458 kb on - strandat 77.520 kb on + strandat 77.521 kb on - strandat 77.525 kb on - strandat 77.525 kb on - strandat 77.525 kb on - strandat 77.525 kb on - strandat 77.525 kb on - strandat 77.525 kb on - strandat 77.539 kb on + strandat 77.539 kb on + strandat 77.540 kb on - strandat 77.588 kb on + strandat 77.589 kb on - strandat 77.589 kb on - strandat 77.589 kb on - strandat 77.589 kb on - strandat 77.592 kb on + strandat 77.592 kb on + strandat 77.592 kb on + strandat 77.592 kb on + strandat 77.592 kb on + strandat 77.592 kb on + strandat 77.593 kb on - strandat 77.593 kb on - strandat 77.593 kb on - strandat 77.593 kb on - strandat 77.599 kb on - strandat 77.625 kb on + strandat 77.626 kb on - strandat 77.695 kb on - strand, within EX28DRAFT_3868at 77.738 kb on + strand, within EX28DRAFT_3868at 77.765 kb on - strand, within EX28DRAFT_3868at 77.881 kb on + strand, within EX28DRAFT_3868at 77.888 kb on - strand, within EX28DRAFT_3868at 77.889 kb on + strand, within EX28DRAFT_3868at 77.890 kb on - strand, within EX28DRAFT_3868at 77.899 kb on + strand, within EX28DRAFT_3868at 77.900 kb on - strand, within EX28DRAFT_3868at 77.955 kb on - strand, within EX28DRAFT_3868at 77.955 kb on - strand, within EX28DRAFT_3868at 78.022 kb on + strand, within EX28DRAFT_3868at 78.023 kb on - strand, within EX28DRAFT_3868at 78.094 kb on + strand, within EX28DRAFT_3868at 78.252 kb on - strand, within EX28DRAFT_3868at 78.285 kb on - strand, within EX28DRAFT_3868at 78.412 kb on + strand, within EX28DRAFT_3868at 78.412 kb on + strand, within EX28DRAFT_3868at 78.412 kb on + strand, within EX28DRAFT_3868at 78.457 kb on + strandat 78.458 kb on - strandat 78.540 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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75,446 - EX28DRAFT_3866 0.10 -3.2
75,458 + EX28DRAFT_3866 0.11 +0.4
75,460 + EX28DRAFT_3866 0.12 -1.7
75,460 + EX28DRAFT_3866 0.12 -0.3
75,612 - EX28DRAFT_3866 0.31 -0.2
75,612 - EX28DRAFT_3866 0.31 +0.4
75,656 + EX28DRAFT_3866 0.36 -0.2
75,657 - EX28DRAFT_3866 0.36 -0.2
75,666 + EX28DRAFT_3866 0.37 +0.1
75,667 - EX28DRAFT_3866 0.38 +0.7
75,667 - EX28DRAFT_3866 0.38 -0.8
75,731 + EX28DRAFT_3866 0.46 +0.0
75,791 - EX28DRAFT_3866 0.53 -0.1
75,835 - EX28DRAFT_3866 0.59 -0.6
75,882 + EX28DRAFT_3866 0.64 +0.0
75,913 - EX28DRAFT_3866 0.68 -0.1
76,004 - EX28DRAFT_3866 0.80 +0.1
76,207 - -0.1
76,209 + +0.4
76,210 - -0.1
76,257 + -0.3
76,315 + -0.4
76,483 - -0.5
76,623 + EX28DRAFT_3867 0.21 +0.2
76,624 - EX28DRAFT_3867 0.21 +0.4
76,662 + EX28DRAFT_3867 0.24 +0.4
76,753 - EX28DRAFT_3867 0.32 -0.0
76,759 - EX28DRAFT_3867 0.32 -0.4
76,957 - EX28DRAFT_3867 0.49 +0.0
77,058 + EX28DRAFT_3867 0.57 +0.0
77,261 - EX28DRAFT_3867 0.74 -0.1
77,268 + EX28DRAFT_3867 0.74 +0.1
77,269 - EX28DRAFT_3867 0.74 +0.9
77,269 - EX28DRAFT_3867 0.74 -0.2
77,284 - EX28DRAFT_3867 0.76 +0.3
77,457 + +0.2
77,458 - -0.2
77,520 + +0.0
77,521 - +1.1
77,525 - +0.6
77,525 - +1.5
77,525 - +0.2
77,525 - -0.0
77,525 - +0.0
77,525 - -0.4
77,539 + +0.1
77,539 + +0.7
77,540 - +0.2
77,588 + -0.0
77,589 - +0.1
77,589 - +0.3
77,589 - -0.2
77,589 - +0.1
77,592 + +1.3
77,592 + +0.1
77,592 + +0.4
77,592 + -1.1
77,592 + -0.5
77,592 + -0.2
77,593 - -0.6
77,593 - +1.1
77,593 - +0.1
77,593 - +0.7
77,599 - +0.4
77,625 + +0.0
77,626 - +0.3
77,695 - EX28DRAFT_3868 0.11 -0.9
77,738 + EX28DRAFT_3868 0.16 +2.9
77,765 - EX28DRAFT_3868 0.19 +0.6
77,881 + EX28DRAFT_3868 0.31 -0.5
77,888 - EX28DRAFT_3868 0.32 +0.8
77,889 + EX28DRAFT_3868 0.32 -0.4
77,890 - EX28DRAFT_3868 0.32 -0.7
77,899 + EX28DRAFT_3868 0.33 -0.6
77,900 - EX28DRAFT_3868 0.34 +0.1
77,955 - EX28DRAFT_3868 0.40 -1.0
77,955 - EX28DRAFT_3868 0.40 +0.4
78,022 + EX28DRAFT_3868 0.47 -1.1
78,023 - EX28DRAFT_3868 0.47 +0.7
78,094 + EX28DRAFT_3868 0.55 -0.2
78,252 - EX28DRAFT_3868 0.72 -0.0
78,285 - EX28DRAFT_3868 0.76 -0.2
78,412 + EX28DRAFT_3868 0.90 +0.0
78,412 + EX28DRAFT_3868 0.90 +0.7
78,412 + EX28DRAFT_3868 0.90 -0.1
78,457 + +0.6
78,458 - +0.6
78,540 + +0.4

Or see this region's nucleotide sequence