Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3800 and EX28DRAFT_3801 overlap by 4 nucleotides EX28DRAFT_3801 and EX28DRAFT_3802 are separated by 10 nucleotides EX28DRAFT_3802 and EX28DRAFT_3803 are separated by 9 nucleotides
EX28DRAFT_3800: EX28DRAFT_3800 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 2,676 to 3,689
_3800
EX28DRAFT_3801: EX28DRAFT_3801 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 3,686 to 4,669
_3801
EX28DRAFT_3802: EX28DRAFT_3802 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 4,680 to 5,582
_3802
EX28DRAFT_3803: EX28DRAFT_3803 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 5,592 to 6,611
_3803
Position (kb) 4
5
6 Strain fitness (log2 ratio) -2
-1
0
1 at 3.683 kb on + strand at 3.689 kb on + strand at 3.690 kb on - strand at 3.837 kb on + strand, within EX28DRAFT_3801 at 3.837 kb on + strand, within EX28DRAFT_3801 at 3.838 kb on - strand, within EX28DRAFT_3801 at 3.838 kb on - strand, within EX28DRAFT_3801 at 3.838 kb on - strand, within EX28DRAFT_3801 at 4.058 kb on - strand, within EX28DRAFT_3801 at 4.301 kb on - strand, within EX28DRAFT_3801 at 4.353 kb on + strand, within EX28DRAFT_3801 at 4.459 kb on + strand, within EX28DRAFT_3801 at 4.580 kb on + strand at 4.580 kb on + strand at 4.581 kb on - strand at 4.659 kb on - strand at 4.681 kb on + strand at 4.733 kb on + strand at 4.734 kb on - strand at 4.734 kb on - strand at 4.943 kb on + strand, within EX28DRAFT_3802 at 4.943 kb on + strand, within EX28DRAFT_3802 at 4.943 kb on + strand, within EX28DRAFT_3802 at 4.952 kb on + strand, within EX28DRAFT_3802 at 5.056 kb on + strand, within EX28DRAFT_3802 at 5.056 kb on + strand, within EX28DRAFT_3802 at 5.057 kb on - strand, within EX28DRAFT_3802 at 5.229 kb on + strand, within EX28DRAFT_3802 at 5.230 kb on - strand, within EX28DRAFT_3802 at 5.297 kb on - strand, within EX28DRAFT_3802 at 5.419 kb on + strand, within EX28DRAFT_3802 at 5.420 kb on - strand, within EX28DRAFT_3802 at 5.463 kb on + strand, within EX28DRAFT_3802 at 5.464 kb on - strand, within EX28DRAFT_3802 at 5.464 kb on - strand, within EX28DRAFT_3802 at 5.470 kb on + strand, within EX28DRAFT_3802 at 5.471 kb on - strand, within EX28DRAFT_3802 at 5.562 kb on - strand at 5.562 kb on - strand at 5.593 kb on + strand at 5.594 kb on - strand at 5.600 kb on + strand at 5.600 kb on + strand at 5.601 kb on - strand at 5.630 kb on - strand at 5.683 kb on - strand at 5.683 kb on - strand at 5.683 kb on - strand at 5.840 kb on + strand, within EX28DRAFT_3803 at 5.903 kb on + strand, within EX28DRAFT_3803 at 5.905 kb on + strand, within EX28DRAFT_3803 at 6.041 kb on + strand, within EX28DRAFT_3803 at 6.060 kb on - strand, within EX28DRAFT_3803 at 6.098 kb on + strand, within EX28DRAFT_3803 at 6.098 kb on + strand, within EX28DRAFT_3803 at 6.179 kb on + strand, within EX28DRAFT_3803 at 6.378 kb on + strand, within EX28DRAFT_3803 at 6.404 kb on + strand, within EX28DRAFT_3803 at 6.404 kb on + strand, within EX28DRAFT_3803 at 6.404 kb on + strand, within EX28DRAFT_3803 at 6.404 kb on + strand, within EX28DRAFT_3803 at 6.405 kb on - strand, within EX28DRAFT_3803 at 6.405 kb on - strand, within EX28DRAFT_3803 at 6.406 kb on + strand, within EX28DRAFT_3803 at 6.406 kb on + strand, within EX28DRAFT_3803 at 6.407 kb on - strand, within EX28DRAFT_3803 at 6.407 kb on - strand, within EX28DRAFT_3803 at 6.482 kb on + strand, within EX28DRAFT_3803 at 6.500 kb on + strand, within EX28DRAFT_3803 at 6.501 kb on - strand, within EX28DRAFT_3803 at 6.527 kb on + strand at 6.528 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 3,683 + -1.1 3,689 + -0.6 3,690 - +0.4 3,837 + EX28DRAFT_3801 0.15 -0.4 3,837 + EX28DRAFT_3801 0.15 -0.5 3,838 - EX28DRAFT_3801 0.15 -0.8 3,838 - EX28DRAFT_3801 0.15 -0.3 3,838 - EX28DRAFT_3801 0.15 -0.7 4,058 - EX28DRAFT_3801 0.38 -0.0 4,301 - EX28DRAFT_3801 0.62 -0.8 4,353 + EX28DRAFT_3801 0.68 -1.3 4,459 + EX28DRAFT_3801 0.79 -0.6 4,580 + -0.7 4,580 + -0.7 4,581 - -1.1 4,659 - -0.1 4,681 + +0.2 4,733 + -0.2 4,734 - -0.9 4,734 - -1.0 4,943 + EX28DRAFT_3802 0.29 -0.8 4,943 + EX28DRAFT_3802 0.29 -0.7 4,943 + EX28DRAFT_3802 0.29 -0.1 4,952 + EX28DRAFT_3802 0.30 -1.1 5,056 + EX28DRAFT_3802 0.42 -1.7 5,056 + EX28DRAFT_3802 0.42 -1.4 5,057 - EX28DRAFT_3802 0.42 -1.0 5,229 + EX28DRAFT_3802 0.61 +0.3 5,230 - EX28DRAFT_3802 0.61 -0.4 5,297 - EX28DRAFT_3802 0.68 -2.3 5,419 + EX28DRAFT_3802 0.82 -1.4 5,420 - EX28DRAFT_3802 0.82 -0.2 5,463 + EX28DRAFT_3802 0.87 -0.3 5,464 - EX28DRAFT_3802 0.87 -0.3 5,464 - EX28DRAFT_3802 0.87 -1.6 5,470 + EX28DRAFT_3802 0.87 -0.3 5,471 - EX28DRAFT_3802 0.88 -1.0 5,562 - -0.6 5,562 - -2.5 5,593 + -0.6 5,594 - -0.2 5,600 + -0.5 5,600 + +0.7 5,601 - -0.4 5,630 - -0.8 5,683 - -0.5 5,683 - -2.4 5,683 - -0.1 5,840 + EX28DRAFT_3803 0.24 -0.5 5,903 + EX28DRAFT_3803 0.30 -0.7 5,905 + EX28DRAFT_3803 0.31 -0.7 6,041 + EX28DRAFT_3803 0.44 -0.7 6,060 - EX28DRAFT_3803 0.46 -0.4 6,098 + EX28DRAFT_3803 0.50 -0.5 6,098 + EX28DRAFT_3803 0.50 -0.9 6,179 + EX28DRAFT_3803 0.58 -0.4 6,378 + EX28DRAFT_3803 0.77 -0.7 6,404 + EX28DRAFT_3803 0.80 -0.5 6,404 + EX28DRAFT_3803 0.80 +0.3 6,404 + EX28DRAFT_3803 0.80 -1.9 6,404 + EX28DRAFT_3803 0.80 -0.2 6,405 - EX28DRAFT_3803 0.80 -1.0 6,405 - EX28DRAFT_3803 0.80 -0.5 6,406 + EX28DRAFT_3803 0.80 -0.5 6,406 + EX28DRAFT_3803 0.80 -1.1 6,407 - EX28DRAFT_3803 0.80 -0.3 6,407 - EX28DRAFT_3803 0.80 -1.3 6,482 + EX28DRAFT_3803 0.87 -1.6 6,500 + EX28DRAFT_3803 0.89 -0.2 6,501 - EX28DRAFT_3803 0.89 -0.6 6,527 + -0.8 6,528 - -0.5
Or see this region's nucleotide sequence