Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3799 and EX28DRAFT_3800 are separated by 43 nucleotides EX28DRAFT_3800 and EX28DRAFT_3801 overlap by 4 nucleotides EX28DRAFT_3801 and EX28DRAFT_3802 are separated by 10 nucleotides
EX28DRAFT_3799: EX28DRAFT_3799 - pantothenate kinase (EC 2.7.1.33), at 1,706 to 2,632
_3799
EX28DRAFT_3800: EX28DRAFT_3800 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 2,676 to 3,689
_3800
EX28DRAFT_3801: EX28DRAFT_3801 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 3,686 to 4,669
_3801
EX28DRAFT_3802: EX28DRAFT_3802 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 4,680 to 5,582
_3802
Position (kb)
2
3
4 Strain fitness (log2 ratio)
-2
-1
0
1 at 1.681 kb on + strand at 2.631 kb on - strand at 2.744 kb on - strand at 2.858 kb on + strand, within EX28DRAFT_3800 at 2.861 kb on + strand, within EX28DRAFT_3800 at 2.861 kb on + strand, within EX28DRAFT_3800 at 2.862 kb on - strand, within EX28DRAFT_3800 at 2.983 kb on + strand, within EX28DRAFT_3800 at 2.983 kb on + strand, within EX28DRAFT_3800 at 2.983 kb on + strand, within EX28DRAFT_3800 at 2.984 kb on - strand, within EX28DRAFT_3800 at 2.984 kb on - strand, within EX28DRAFT_3800 at 2.984 kb on - strand, within EX28DRAFT_3800 at 3.008 kb on + strand, within EX28DRAFT_3800 at 3.009 kb on - strand, within EX28DRAFT_3800 at 3.046 kb on + strand, within EX28DRAFT_3800 at 3.046 kb on + strand, within EX28DRAFT_3800 at 3.047 kb on - strand, within EX28DRAFT_3800 at 3.226 kb on + strand, within EX28DRAFT_3800 at 3.226 kb on + strand, within EX28DRAFT_3800 at 3.365 kb on - strand, within EX28DRAFT_3800 at 3.449 kb on - strand, within EX28DRAFT_3800 at 3.449 kb on - strand, within EX28DRAFT_3800 at 3.628 kb on + strand at 3.683 kb on + strand at 3.689 kb on + strand at 3.690 kb on - strand at 3.837 kb on + strand, within EX28DRAFT_3801 at 3.837 kb on + strand, within EX28DRAFT_3801 at 3.838 kb on - strand, within EX28DRAFT_3801 at 3.838 kb on - strand, within EX28DRAFT_3801 at 3.838 kb on - strand, within EX28DRAFT_3801 at 4.058 kb on - strand, within EX28DRAFT_3801 at 4.301 kb on - strand, within EX28DRAFT_3801 at 4.353 kb on + strand, within EX28DRAFT_3801 at 4.459 kb on + strand, within EX28DRAFT_3801 at 4.580 kb on + strand at 4.580 kb on + strand at 4.581 kb on - strand at 4.659 kb on - strand at 4.681 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,681 + -0.0 2,631 - +0.1 2,744 - -0.6 2,858 + EX28DRAFT_3800 0.18 -2.1 2,861 + EX28DRAFT_3800 0.18 -0.7 2,861 + EX28DRAFT_3800 0.18 -1.7 2,862 - EX28DRAFT_3800 0.18 -0.9 2,983 + EX28DRAFT_3800 0.30 -0.7 2,983 + EX28DRAFT_3800 0.30 -1.2 2,983 + EX28DRAFT_3800 0.30 -1.1 2,984 - EX28DRAFT_3800 0.30 +0.3 2,984 - EX28DRAFT_3800 0.30 -0.2 2,984 - EX28DRAFT_3800 0.30 -0.3 3,008 + EX28DRAFT_3800 0.33 -0.0 3,009 - EX28DRAFT_3800 0.33 -0.8 3,046 + EX28DRAFT_3800 0.36 +0.0 3,046 + EX28DRAFT_3800 0.36 -0.3 3,047 - EX28DRAFT_3800 0.37 -0.6 3,226 + EX28DRAFT_3800 0.54 -0.6 3,226 + EX28DRAFT_3800 0.54 -1.0 3,365 - EX28DRAFT_3800 0.68 -0.2 3,449 - EX28DRAFT_3800 0.76 -1.1 3,449 - EX28DRAFT_3800 0.76 -2.6 3,628 + -0.2 3,683 + -1.1 3,689 + -0.6 3,690 - +0.4 3,837 + EX28DRAFT_3801 0.15 -0.4 3,837 + EX28DRAFT_3801 0.15 -0.5 3,838 - EX28DRAFT_3801 0.15 -0.8 3,838 - EX28DRAFT_3801 0.15 -0.3 3,838 - EX28DRAFT_3801 0.15 -0.7 4,058 - EX28DRAFT_3801 0.38 -0.0 4,301 - EX28DRAFT_3801 0.62 -0.8 4,353 + EX28DRAFT_3801 0.68 -1.3 4,459 + EX28DRAFT_3801 0.79 -0.6 4,580 + -0.7 4,580 + -0.7 4,581 - -1.1 4,659 - -0.1 4,681 + +0.2
Or see this region's nucleotide sequence