Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3785 and EX28DRAFT_3786 are separated by 40 nucleotides EX28DRAFT_3786 and EX28DRAFT_3787 overlap by 8 nucleotides EX28DRAFT_3787 and EX28DRAFT_3788 are separated by 188 nucleotides
EX28DRAFT_3785: EX28DRAFT_3785 - lipoprotein, YaeC family, at 466,548 to 467,363
_3785
EX28DRAFT_3786: EX28DRAFT_3786 - ABC-type metal ion transport system, permease component, at 467,404 to 468,057
_3786
EX28DRAFT_3787: EX28DRAFT_3787 - D-methionine ABC transporter, ATP-binding protein, at 468,050 to 469,081
_3787
EX28DRAFT_3788: EX28DRAFT_3788 - D,D-heptose 1,7-bisphosphate phosphatase, at 469,270 to 469,836
_3788
Position (kb) 468
469
470 Strain fitness (log2 ratio) -2
-1
0
1
2 at 467.061 kb on - strand, within EX28DRAFT_3785 at 467.092 kb on + strand, within EX28DRAFT_3785 at 467.092 kb on + strand, within EX28DRAFT_3785 at 467.100 kb on - strand, within EX28DRAFT_3785 at 467.158 kb on + strand, within EX28DRAFT_3785 at 467.158 kb on + strand, within EX28DRAFT_3785 at 467.194 kb on + strand, within EX28DRAFT_3785 at 467.194 kb on + strand, within EX28DRAFT_3785 at 467.195 kb on - strand, within EX28DRAFT_3785 at 467.264 kb on + strand, within EX28DRAFT_3785 at 467.331 kb on + strand at 467.332 kb on - strand at 467.350 kb on - strand at 467.355 kb on - strand at 467.374 kb on + strand at 467.399 kb on + strand at 467.405 kb on + strand at 467.456 kb on + strand at 467.456 kb on + strand at 467.505 kb on + strand, within EX28DRAFT_3786 at 467.505 kb on + strand, within EX28DRAFT_3786 at 467.506 kb on - strand, within EX28DRAFT_3786 at 467.506 kb on - strand, within EX28DRAFT_3786 at 467.507 kb on + strand, within EX28DRAFT_3786 at 467.515 kb on - strand, within EX28DRAFT_3786 at 467.517 kb on - strand, within EX28DRAFT_3786 at 467.764 kb on + strand, within EX28DRAFT_3786 at 467.765 kb on - strand, within EX28DRAFT_3786 at 467.863 kb on - strand, within EX28DRAFT_3786 at 467.863 kb on - strand, within EX28DRAFT_3786 at 467.943 kb on - strand, within EX28DRAFT_3786 at 467.943 kb on - strand, within EX28DRAFT_3786 at 467.943 kb on - strand, within EX28DRAFT_3786 at 467.951 kb on - strand, within EX28DRAFT_3786 at 468.057 kb on + strand at 468.058 kb on - strand at 468.077 kb on + strand at 468.078 kb on - strand at 468.078 kb on - strand at 468.175 kb on - strand, within EX28DRAFT_3787 at 468.407 kb on + strand, within EX28DRAFT_3787 at 468.408 kb on - strand, within EX28DRAFT_3787 at 468.490 kb on + strand, within EX28DRAFT_3787 at 468.490 kb on + strand, within EX28DRAFT_3787 at 468.491 kb on - strand, within EX28DRAFT_3787 at 468.491 kb on - strand, within EX28DRAFT_3787 at 468.491 kb on - strand, within EX28DRAFT_3787 at 468.491 kb on - strand, within EX28DRAFT_3787 at 468.493 kb on + strand, within EX28DRAFT_3787 at 468.493 kb on + strand, within EX28DRAFT_3787 at 468.494 kb on - strand, within EX28DRAFT_3787 at 468.599 kb on + strand, within EX28DRAFT_3787 at 468.676 kb on + strand, within EX28DRAFT_3787 at 468.896 kb on + strand, within EX28DRAFT_3787 at 468.952 kb on + strand, within EX28DRAFT_3787 at 468.953 kb on - strand, within EX28DRAFT_3787 at 469.087 kb on + strand at 469.098 kb on + strand at 469.098 kb on + strand at 469.098 kb on + strand at 469.099 kb on - strand at 469.099 kb on - strand at 469.107 kb on + strand at 469.182 kb on - strand at 469.377 kb on - strand, within EX28DRAFT_3788 at 469.819 kb on - strand at 469.911 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 467,061 - EX28DRAFT_3785 0.63 +0.2 467,092 + EX28DRAFT_3785 0.67 +0.6 467,092 + EX28DRAFT_3785 0.67 -0.4 467,100 - EX28DRAFT_3785 0.68 +0.2 467,158 + EX28DRAFT_3785 0.75 +0.1 467,158 + EX28DRAFT_3785 0.75 -1.5 467,194 + EX28DRAFT_3785 0.79 +0.7 467,194 + EX28DRAFT_3785 0.79 +1.8 467,195 - EX28DRAFT_3785 0.79 +0.3 467,264 + EX28DRAFT_3785 0.88 -1.1 467,331 + +0.2 467,332 - -0.5 467,350 - -0.1 467,355 - -0.4 467,374 + +0.1 467,399 + -0.1 467,405 + -0.4 467,456 + -0.3 467,456 + +2.1 467,505 + EX28DRAFT_3786 0.15 -0.1 467,505 + EX28DRAFT_3786 0.15 +0.2 467,506 - EX28DRAFT_3786 0.16 +0.4 467,506 - EX28DRAFT_3786 0.16 -0.5 467,507 + EX28DRAFT_3786 0.16 -0.6 467,515 - EX28DRAFT_3786 0.17 -2.4 467,517 - EX28DRAFT_3786 0.17 +1.3 467,764 + EX28DRAFT_3786 0.55 +0.4 467,765 - EX28DRAFT_3786 0.55 -0.8 467,863 - EX28DRAFT_3786 0.70 +0.1 467,863 - EX28DRAFT_3786 0.70 -0.9 467,943 - EX28DRAFT_3786 0.82 -0.8 467,943 - EX28DRAFT_3786 0.82 -0.6 467,943 - EX28DRAFT_3786 0.82 -0.2 467,951 - EX28DRAFT_3786 0.84 +0.5 468,057 + +0.2 468,058 - -0.8 468,077 + +0.5 468,078 - +0.2 468,078 - +0.7 468,175 - EX28DRAFT_3787 0.12 -0.4 468,407 + EX28DRAFT_3787 0.35 +1.9 468,408 - EX28DRAFT_3787 0.35 +1.7 468,490 + EX28DRAFT_3787 0.43 -0.7 468,490 + EX28DRAFT_3787 0.43 -0.2 468,491 - EX28DRAFT_3787 0.43 -0.2 468,491 - EX28DRAFT_3787 0.43 -1.0 468,491 - EX28DRAFT_3787 0.43 -1.1 468,491 - EX28DRAFT_3787 0.43 +0.7 468,493 + EX28DRAFT_3787 0.43 -0.0 468,493 + EX28DRAFT_3787 0.43 -0.5 468,494 - EX28DRAFT_3787 0.43 -0.6 468,599 + EX28DRAFT_3787 0.53 +0.1 468,676 + EX28DRAFT_3787 0.61 -0.3 468,896 + EX28DRAFT_3787 0.82 +0.4 468,952 + EX28DRAFT_3787 0.87 +0.3 468,953 - EX28DRAFT_3787 0.88 -0.8 469,087 + -0.1 469,098 + +0.0 469,098 + +1.3 469,098 + -0.7 469,099 - +0.7 469,099 - +0.4 469,107 + -0.4 469,182 - -0.1 469,377 - EX28DRAFT_3788 0.19 -2.6 469,819 - -1.1 469,911 - +0.7
Or see this region's nucleotide sequence