Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3704

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3702 and EX28DRAFT_3703 are separated by 87 nucleotidesEX28DRAFT_3703 and EX28DRAFT_3704 are separated by 9 nucleotidesEX28DRAFT_3704 and EX28DRAFT_3705 are separated by 18 nucleotidesEX28DRAFT_3705 and EX28DRAFT_3706 are separated by 10 nucleotides EX28DRAFT_3702: EX28DRAFT_3702 - nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19), at 372,514 to 373,407 _3702 EX28DRAFT_3703: EX28DRAFT_3703 - N-acetylmuramoyl-L-alanine amidase, at 373,495 to 374,046 _3703 EX28DRAFT_3704: EX28DRAFT_3704 - Membrane protein required for beta-lactamase induction, at 374,056 to 374,910 _3704 EX28DRAFT_3705: EX28DRAFT_3705 - Predicted beta-xylosidase, at 374,929 to 375,879 _3705 EX28DRAFT_3706: EX28DRAFT_3706 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 375,890 to 377,287 _3706 Position (kb) 374 375Strain fitness (log2 ratio) -2 -1 0 1at 373.347 kb on + strandat 373.350 kb on + strandat 373.350 kb on + strandat 373.350 kb on + strandat 373.350 kb on + strandat 373.350 kb on + strandat 373.351 kb on - strandat 373.351 kb on - strandat 373.351 kb on - strandat 373.351 kb on - strandat 373.351 kb on - strandat 373.351 kb on - strandat 373.354 kb on - strandat 373.391 kb on + strandat 373.410 kb on + strandat 373.411 kb on - strandat 373.411 kb on - strandat 373.437 kb on - strandat 373.452 kb on + strandat 374.045 kb on - strandat 374.052 kb on + strandat 374.052 kb on + strandat 374.052 kb on + strandat 374.068 kb on - strandat 374.214 kb on + strand, within EX28DRAFT_3704at 374.214 kb on + strand, within EX28DRAFT_3704at 374.214 kb on + strand, within EX28DRAFT_3704at 374.215 kb on - strand, within EX28DRAFT_3704at 374.239 kb on + strand, within EX28DRAFT_3704at 374.335 kb on + strand, within EX28DRAFT_3704at 374.336 kb on - strand, within EX28DRAFT_3704at 374.473 kb on - strand, within EX28DRAFT_3704at 374.485 kb on + strand, within EX28DRAFT_3704at 374.485 kb on + strand, within EX28DRAFT_3704at 374.486 kb on - strand, within EX28DRAFT_3704at 374.510 kb on + strand, within EX28DRAFT_3704at 374.684 kb on + strand, within EX28DRAFT_3704at 374.742 kb on + strand, within EX28DRAFT_3704at 374.743 kb on - strand, within EX28DRAFT_3704at 374.743 kb on - strand, within EX28DRAFT_3704at 374.753 kb on - strand, within EX28DRAFT_3704at 375.020 kb on + strandat 375.021 kb on - strandat 375.070 kb on + strand, within EX28DRAFT_3705at 375.070 kb on + strand, within EX28DRAFT_3705at 375.070 kb on + strand, within EX28DRAFT_3705at 375.070 kb on + strand, within EX28DRAFT_3705at 375.071 kb on - strand, within EX28DRAFT_3705at 375.071 kb on - strand, within EX28DRAFT_3705at 375.071 kb on - strand, within EX28DRAFT_3705at 375.134 kb on + strand, within EX28DRAFT_3705at 375.135 kb on - strand, within EX28DRAFT_3705at 375.206 kb on - strand, within EX28DRAFT_3705at 375.227 kb on + strand, within EX28DRAFT_3705at 375.228 kb on - strand, within EX28DRAFT_3705at 375.228 kb on - strand, within EX28DRAFT_3705at 375.254 kb on + strand, within EX28DRAFT_3705at 375.254 kb on + strand, within EX28DRAFT_3705at 375.271 kb on - strand, within EX28DRAFT_3705at 375.332 kb on + strand, within EX28DRAFT_3705at 375.399 kb on - strand, within EX28DRAFT_3705at 375.399 kb on - strand, within EX28DRAFT_3705at 375.399 kb on - strand, within EX28DRAFT_3705at 375.495 kb on + strand, within EX28DRAFT_3705at 375.576 kb on + strand, within EX28DRAFT_3705at 375.576 kb on + strand, within EX28DRAFT_3705at 375.576 kb on + strand, within EX28DRAFT_3705at 375.576 kb on + strand, within EX28DRAFT_3705at 375.577 kb on - strand, within EX28DRAFT_3705at 375.577 kb on - strand, within EX28DRAFT_3705at 375.633 kb on - strand, within EX28DRAFT_3705at 375.633 kb on - strand, within EX28DRAFT_3705at 375.633 kb on - strand, within EX28DRAFT_3705at 375.633 kb on - strand, within EX28DRAFT_3705at 375.633 kb on - strand, within EX28DRAFT_3705at 375.633 kb on - strand, within EX28DRAFT_3705at 375.638 kb on + strand, within EX28DRAFT_3705at 375.638 kb on + strand, within EX28DRAFT_3705at 375.639 kb on - strand, within EX28DRAFT_3705at 375.639 kb on - strand, within EX28DRAFT_3705at 375.735 kb on + strand, within EX28DRAFT_3705at 375.736 kb on - strand, within EX28DRAFT_3705at 375.806 kb on + strandat 375.806 kb on + strandat 375.809 kb on + strandat 375.827 kb on - strandat 375.891 kb on + strandat 375.892 kb on - strandat 375.892 kb on - strandat 375.892 kb on - strandat 375.896 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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373,347 + -0.2
373,350 + -0.5
373,350 + +1.0
373,350 + +0.5
373,350 + -0.5
373,350 + -0.6
373,351 - -0.4
373,351 - +0.5
373,351 - +0.4
373,351 - +0.1
373,351 - +1.4
373,351 - -0.0
373,354 - -0.2
373,391 + -0.2
373,410 + +0.5
373,411 - -0.8
373,411 - -0.9
373,437 - -0.7
373,452 + -0.3
374,045 - +0.4
374,052 + +1.0
374,052 + -0.7
374,052 + +0.5
374,068 - +0.3
374,214 + EX28DRAFT_3704 0.18 +0.6
374,214 + EX28DRAFT_3704 0.18 +0.1
374,214 + EX28DRAFT_3704 0.18 +0.7
374,215 - EX28DRAFT_3704 0.19 +0.9
374,239 + EX28DRAFT_3704 0.21 +1.2
374,335 + EX28DRAFT_3704 0.33 +0.3
374,336 - EX28DRAFT_3704 0.33 +0.3
374,473 - EX28DRAFT_3704 0.49 +0.7
374,485 + EX28DRAFT_3704 0.50 -0.0
374,485 + EX28DRAFT_3704 0.50 +0.1
374,486 - EX28DRAFT_3704 0.50 +0.1
374,510 + EX28DRAFT_3704 0.53 -0.1
374,684 + EX28DRAFT_3704 0.73 -0.6
374,742 + EX28DRAFT_3704 0.80 -0.3
374,743 - EX28DRAFT_3704 0.80 +0.2
374,743 - EX28DRAFT_3704 0.80 +0.9
374,753 - EX28DRAFT_3704 0.82 +0.2
375,020 + +0.3
375,021 - +0.3
375,070 + EX28DRAFT_3705 0.15 +0.1
375,070 + EX28DRAFT_3705 0.15 -0.4
375,070 + EX28DRAFT_3705 0.15 -2.4
375,070 + EX28DRAFT_3705 0.15 +0.4
375,071 - EX28DRAFT_3705 0.15 -0.5
375,071 - EX28DRAFT_3705 0.15 -0.1
375,071 - EX28DRAFT_3705 0.15 -0.2
375,134 + EX28DRAFT_3705 0.22 +0.5
375,135 - EX28DRAFT_3705 0.22 -1.0
375,206 - EX28DRAFT_3705 0.29 -0.9
375,227 + EX28DRAFT_3705 0.31 +0.1
375,228 - EX28DRAFT_3705 0.31 +0.3
375,228 - EX28DRAFT_3705 0.31 -0.3
375,254 + EX28DRAFT_3705 0.34 -0.1
375,254 + EX28DRAFT_3705 0.34 +0.7
375,271 - EX28DRAFT_3705 0.36 +0.8
375,332 + EX28DRAFT_3705 0.42 +0.4
375,399 - EX28DRAFT_3705 0.49 +0.2
375,399 - EX28DRAFT_3705 0.49 +0.3
375,399 - EX28DRAFT_3705 0.49 +0.2
375,495 + EX28DRAFT_3705 0.60 -1.8
375,576 + EX28DRAFT_3705 0.68 -0.3
375,576 + EX28DRAFT_3705 0.68 +0.4
375,576 + EX28DRAFT_3705 0.68 -0.7
375,576 + EX28DRAFT_3705 0.68 -0.2
375,577 - EX28DRAFT_3705 0.68 -0.2
375,577 - EX28DRAFT_3705 0.68 +0.2
375,633 - EX28DRAFT_3705 0.74 -0.1
375,633 - EX28DRAFT_3705 0.74 +0.3
375,633 - EX28DRAFT_3705 0.74 -0.1
375,633 - EX28DRAFT_3705 0.74 -0.5
375,633 - EX28DRAFT_3705 0.74 -0.5
375,633 - EX28DRAFT_3705 0.74 +0.4
375,638 + EX28DRAFT_3705 0.75 -0.4
375,638 + EX28DRAFT_3705 0.75 -0.3
375,639 - EX28DRAFT_3705 0.75 +1.3
375,639 - EX28DRAFT_3705 0.75 -0.0
375,735 + EX28DRAFT_3705 0.85 -0.0
375,736 - EX28DRAFT_3705 0.85 -0.5
375,806 + -0.3
375,806 + +1.1
375,809 + +0.3
375,827 - -0.1
375,891 + -0.7
375,892 - +0.9
375,892 - +0.1
375,892 - +1.0
375,896 - +0.9

Or see this region's nucleotide sequence