Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3571 and EX28DRAFT_3572 are separated by 95 nucleotides EX28DRAFT_3572 and EX28DRAFT_3573 are separated by 95 nucleotides EX28DRAFT_3573 and EX28DRAFT_3574 are separated by 254 nucleotides EX28DRAFT_3574 and EX28DRAFT_3575 are separated by 41 nucleotides EX28DRAFT_3575 and EX28DRAFT_3576 are separated by 33 nucleotides EX28DRAFT_3576 and EX28DRAFT_3577 are separated by 33 nucleotides EX28DRAFT_3577 and EX28DRAFT_3578 are separated by 28 nucleotides
EX28DRAFT_3571: EX28DRAFT_3571 - PTS system, lactose/cellobiose family IIC component, at 232,638 to 233,984
_3571
EX28DRAFT_3572: EX28DRAFT_3572 - siderophore-iron reductase FhuF, at 234,080 to 234,868
_3572
EX28DRAFT_3573: EX28DRAFT_3573 - diguanylate cyclase (GGDEF) domain, at 234,964 to 236,028
_3573
EX28DRAFT_3574: EX28DRAFT_3574 - Protein of unknown function (DUF1435), at 236,283 to 236,513
_3574
EX28DRAFT_3575: EX28DRAFT_3575 - tRNA, at 236,555 to 236,640
_3575
EX28DRAFT_3576: EX28DRAFT_3576 - tRNA, at 236,674 to 236,759
_3576
EX28DRAFT_3577: EX28DRAFT_3577 - tRNA, at 236,793 to 236,879
_3577
EX28DRAFT_3578: EX28DRAFT_3578 - tRNA, at 236,908 to 236,994
_3578
Position (kb) 234
235
236
237 Strain fitness (log2 ratio) -2
-1
0
1
2 at 233.983 kb on - strand at 233.986 kb on + strand at 234.082 kb on - strand at 234.082 kb on - strand at 234.304 kb on - strand, within EX28DRAFT_3572 at 234.323 kb on - strand, within EX28DRAFT_3572 at 234.362 kb on + strand, within EX28DRAFT_3572 at 234.363 kb on - strand, within EX28DRAFT_3572 at 234.534 kb on - strand, within EX28DRAFT_3572 at 234.573 kb on + strand, within EX28DRAFT_3572 at 234.573 kb on + strand, within EX28DRAFT_3572 at 234.574 kb on - strand, within EX28DRAFT_3572 at 234.640 kb on + strand, within EX28DRAFT_3572 at 234.641 kb on - strand, within EX28DRAFT_3572 at 234.641 kb on - strand, within EX28DRAFT_3572 at 234.869 kb on - strand at 234.871 kb on + strand at 234.872 kb on - strand at 234.873 kb on + strand at 234.873 kb on + strand at 234.874 kb on - strand at 234.874 kb on - strand at 234.885 kb on + strand at 234.886 kb on - strand at 234.912 kb on + strand at 234.913 kb on - strand at 235.000 kb on - strand at 235.000 kb on - strand at 235.152 kb on - strand, within EX28DRAFT_3573 at 235.317 kb on + strand, within EX28DRAFT_3573 at 235.318 kb on - strand, within EX28DRAFT_3573 at 235.318 kb on - strand, within EX28DRAFT_3573 at 235.337 kb on + strand, within EX28DRAFT_3573 at 235.337 kb on + strand, within EX28DRAFT_3573 at 235.338 kb on - strand, within EX28DRAFT_3573 at 235.338 kb on - strand, within EX28DRAFT_3573 at 235.434 kb on + strand, within EX28DRAFT_3573 at 235.436 kb on + strand, within EX28DRAFT_3573 at 235.437 kb on - strand, within EX28DRAFT_3573 at 235.586 kb on + strand, within EX28DRAFT_3573 at 235.604 kb on - strand, within EX28DRAFT_3573 at 235.605 kb on + strand, within EX28DRAFT_3573 at 235.605 kb on + strand, within EX28DRAFT_3573 at 235.660 kb on - strand, within EX28DRAFT_3573 at 235.660 kb on - strand, within EX28DRAFT_3573 at 235.730 kb on + strand, within EX28DRAFT_3573 at 235.730 kb on + strand, within EX28DRAFT_3573 at 235.818 kb on + strand, within EX28DRAFT_3573 at 235.818 kb on + strand, within EX28DRAFT_3573 at 235.819 kb on - strand, within EX28DRAFT_3573 at 235.888 kb on - strand, within EX28DRAFT_3573 at 235.888 kb on - strand, within EX28DRAFT_3573 at 235.888 kb on - strand, within EX28DRAFT_3573 at 235.901 kb on - strand, within EX28DRAFT_3573 at 235.964 kb on - strand at 236.065 kb on + strand at 236.467 kb on + strand, within EX28DRAFT_3574 at 236.546 kb on + strand at 236.547 kb on - strand at 236.552 kb on - strand at 236.552 kb on - strand at 236.552 kb on - strand at 236.599 kb on - strand, within EX28DRAFT_3575 at 236.851 kb on - strand, within EX28DRAFT_3577 at 236.894 kb on - strand at 236.894 kb on - strand at 236.907 kb on - strand at 236.907 kb on - strand at 237.017 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 233,983 - -0.3 233,986 + -0.9 234,082 - +0.2 234,082 - +0.1 234,304 - EX28DRAFT_3572 0.28 -0.4 234,323 - EX28DRAFT_3572 0.31 +0.1 234,362 + EX28DRAFT_3572 0.36 -0.1 234,363 - EX28DRAFT_3572 0.36 +1.5 234,534 - EX28DRAFT_3572 0.58 +1.7 234,573 + EX28DRAFT_3572 0.62 +1.8 234,573 + EX28DRAFT_3572 0.62 -1.0 234,574 - EX28DRAFT_3572 0.63 -0.1 234,640 + EX28DRAFT_3572 0.71 +0.4 234,641 - EX28DRAFT_3572 0.71 -0.8 234,641 - EX28DRAFT_3572 0.71 +0.4 234,869 - +0.2 234,871 + +0.0 234,872 - +0.2 234,873 + +0.1 234,873 + -1.0 234,874 - -0.0 234,874 - +0.1 234,885 + -0.2 234,886 - -0.5 234,912 + +0.1 234,913 - +0.2 235,000 - +0.0 235,000 - +0.6 235,152 - EX28DRAFT_3573 0.18 +0.9 235,317 + EX28DRAFT_3573 0.33 +0.5 235,318 - EX28DRAFT_3573 0.33 +0.3 235,318 - EX28DRAFT_3573 0.33 +0.5 235,337 + EX28DRAFT_3573 0.35 -0.1 235,337 + EX28DRAFT_3573 0.35 +0.3 235,338 - EX28DRAFT_3573 0.35 +0.4 235,338 - EX28DRAFT_3573 0.35 +0.3 235,434 + EX28DRAFT_3573 0.44 +0.8 235,436 + EX28DRAFT_3573 0.44 +0.1 235,437 - EX28DRAFT_3573 0.44 +0.5 235,586 + EX28DRAFT_3573 0.58 -0.0 235,604 - EX28DRAFT_3573 0.60 +0.9 235,605 + EX28DRAFT_3573 0.60 -1.0 235,605 + EX28DRAFT_3573 0.60 +0.8 235,660 - EX28DRAFT_3573 0.65 -0.7 235,660 - EX28DRAFT_3573 0.65 +0.1 235,730 + EX28DRAFT_3573 0.72 +0.4 235,730 + EX28DRAFT_3573 0.72 -0.1 235,818 + EX28DRAFT_3573 0.80 +1.1 235,818 + EX28DRAFT_3573 0.80 -0.7 235,819 - EX28DRAFT_3573 0.80 +1.7 235,888 - EX28DRAFT_3573 0.87 +1.7 235,888 - EX28DRAFT_3573 0.87 +0.1 235,888 - EX28DRAFT_3573 0.87 -0.4 235,901 - EX28DRAFT_3573 0.88 +0.6 235,964 - +0.4 236,065 + +0.1 236,467 + EX28DRAFT_3574 0.80 +0.3 236,546 + -0.5 236,547 - +0.3 236,552 - -0.9 236,552 - +0.1 236,552 - -0.4 236,599 - EX28DRAFT_3575 0.51 +0.3 236,851 - EX28DRAFT_3577 0.67 +0.3 236,894 - +0.3 236,894 - -1.8 236,907 - +0.2 236,907 - +0.1 237,017 - +0.0
Or see this region's nucleotide sequence