Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3549 and EX28DRAFT_3550 are separated by 92 nucleotides EX28DRAFT_3550 and EX28DRAFT_3551 overlap by 1 nucleotides EX28DRAFT_3551 and EX28DRAFT_3552 are separated by 1 nucleotides EX28DRAFT_3552 and EX28DRAFT_3553 are separated by 126 nucleotides
EX28DRAFT_3549: EX28DRAFT_3549 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 213,067 to 214,731
_3549
EX28DRAFT_3550: EX28DRAFT_3550 - Predicted acetyltransferase, at 214,824 to 215,360
_3550
EX28DRAFT_3551: EX28DRAFT_3551 - hypothetical protein, at 215,360 to 215,833
_3551
EX28DRAFT_3552: EX28DRAFT_3552 - Transcriptional regulatory protein, C terminal, at 215,835 to 216,575
_3552
EX28DRAFT_3553: EX28DRAFT_3553 - Uncharacterized secreted protein, at 216,702 to 217,658
_3553
Position (kb) 215
216 Strain fitness (log2 ratio) -2
-1
0
1 at 214.823 kb on - strand at 214.826 kb on - strand at 214.965 kb on + strand, within EX28DRAFT_3550 at 214.966 kb on - strand, within EX28DRAFT_3550 at 215.009 kb on + strand, within EX28DRAFT_3550 at 215.093 kb on + strand, within EX28DRAFT_3550 at 215.167 kb on - strand, within EX28DRAFT_3550 at 215.167 kb on - strand, within EX28DRAFT_3550 at 215.340 kb on + strand at 215.340 kb on + strand at 215.341 kb on - strand at 215.362 kb on - strand at 215.473 kb on - strand, within EX28DRAFT_3551 at 215.569 kb on + strand, within EX28DRAFT_3551 at 215.665 kb on + strand, within EX28DRAFT_3551 at 215.763 kb on + strand, within EX28DRAFT_3551 at 215.810 kb on + strand at 215.833 kb on + strand at 215.834 kb on - strand at 215.846 kb on - strand at 215.848 kb on + strand at 215.848 kb on + strand at 215.851 kb on + strand at 215.852 kb on - strand at 215.852 kb on - strand at 215.852 kb on - strand at 215.852 kb on - strand at 215.953 kb on + strand, within EX28DRAFT_3552 at 215.954 kb on - strand, within EX28DRAFT_3552 at 216.051 kb on - strand, within EX28DRAFT_3552 at 216.272 kb on + strand, within EX28DRAFT_3552 at 216.352 kb on + strand, within EX28DRAFT_3552 at 216.467 kb on + strand, within EX28DRAFT_3552 at 216.467 kb on + strand, within EX28DRAFT_3552 at 216.515 kb on + strand at 216.515 kb on + strand at 216.516 kb on - strand at 216.575 kb on + strand at 216.585 kb on + strand at 216.622 kb on + strand at 216.788 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 214,823 - +0.2 214,826 - +0.9 214,965 + EX28DRAFT_3550 0.26 -0.0 214,966 - EX28DRAFT_3550 0.26 -1.0 215,009 + EX28DRAFT_3550 0.34 +0.7 215,093 + EX28DRAFT_3550 0.50 -1.6 215,167 - EX28DRAFT_3550 0.64 +0.2 215,167 - EX28DRAFT_3550 0.64 +0.5 215,340 + +1.2 215,340 + -0.4 215,341 - +0.4 215,362 - +1.1 215,473 - EX28DRAFT_3551 0.24 +0.2 215,569 + EX28DRAFT_3551 0.44 -2.6 215,665 + EX28DRAFT_3551 0.64 -0.5 215,763 + EX28DRAFT_3551 0.85 -1.0 215,810 + -0.1 215,833 + -0.5 215,834 - +0.4 215,846 - +0.5 215,848 + +0.1 215,848 + +0.4 215,851 + -0.6 215,852 - +0.4 215,852 - -1.0 215,852 - -0.4 215,852 - +0.7 215,953 + EX28DRAFT_3552 0.16 -0.3 215,954 - EX28DRAFT_3552 0.16 +0.0 216,051 - EX28DRAFT_3552 0.29 +0.0 216,272 + EX28DRAFT_3552 0.59 +0.2 216,352 + EX28DRAFT_3552 0.70 +0.2 216,467 + EX28DRAFT_3552 0.85 -0.7 216,467 + EX28DRAFT_3552 0.85 +0.3 216,515 + -0.2 216,515 + +0.2 216,516 - -0.2 216,575 + +0.0 216,585 + +0.7 216,622 + +0.1 216,788 - -1.3
Or see this region's nucleotide sequence