Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3530

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3528 and EX28DRAFT_3529 are separated by 47 nucleotidesEX28DRAFT_3529 and EX28DRAFT_3530 are separated by 151 nucleotidesEX28DRAFT_3530 and EX28DRAFT_3531 are separated by 44 nucleotidesEX28DRAFT_3531 and EX28DRAFT_3532 overlap by 1 nucleotides EX28DRAFT_3528: EX28DRAFT_3528 - Putative threonine efflux protein, at 191,232 to 191,879 _3528 EX28DRAFT_3529: EX28DRAFT_3529 - AraC-type DNA-binding domain-containing proteins, at 191,927 to 192,670 _3529 EX28DRAFT_3530: EX28DRAFT_3530 - NAD-dependent aldehyde dehydrogenases, at 192,822 to 194,192 _3530 EX28DRAFT_3531: EX28DRAFT_3531 - hypothetical protein, at 194,237 to 194,557 _3531 EX28DRAFT_3532: EX28DRAFT_3532 - YfaZ precursor, at 194,557 to 195,102 _3532 Position (kb) 192 193 194 195Strain fitness (log2 ratio) -2 -1 0 1at 191.912 kb on - strandat 191.928 kb on + strandat 191.928 kb on + strandat 191.932 kb on + strandat 191.932 kb on + strandat 191.933 kb on - strandat 191.933 kb on - strandat 191.943 kb on - strandat 191.985 kb on + strandat 191.986 kb on - strandat 192.053 kb on - strand, within EX28DRAFT_3529at 192.346 kb on - strand, within EX28DRAFT_3529at 192.408 kb on + strand, within EX28DRAFT_3529at 192.408 kb on + strand, within EX28DRAFT_3529at 192.409 kb on - strand, within EX28DRAFT_3529at 192.415 kb on + strand, within EX28DRAFT_3529at 192.415 kb on + strand, within EX28DRAFT_3529at 192.416 kb on - strand, within EX28DRAFT_3529at 192.416 kb on - strand, within EX28DRAFT_3529at 192.416 kb on - strand, within EX28DRAFT_3529at 192.416 kb on - strand, within EX28DRAFT_3529at 192.416 kb on - strand, within EX28DRAFT_3529at 192.416 kb on - strand, within EX28DRAFT_3529at 192.420 kb on + strand, within EX28DRAFT_3529at 192.420 kb on + strand, within EX28DRAFT_3529at 192.421 kb on - strand, within EX28DRAFT_3529at 192.504 kb on + strand, within EX28DRAFT_3529at 192.504 kb on + strand, within EX28DRAFT_3529at 192.504 kb on + strand, within EX28DRAFT_3529at 192.504 kb on + strand, within EX28DRAFT_3529at 192.505 kb on - strand, within EX28DRAFT_3529at 192.505 kb on - strand, within EX28DRAFT_3529at 192.505 kb on - strand, within EX28DRAFT_3529at 192.505 kb on - strand, within EX28DRAFT_3529at 192.505 kb on - strand, within EX28DRAFT_3529at 192.595 kb on + strand, within EX28DRAFT_3529at 192.595 kb on + strand, within EX28DRAFT_3529at 192.596 kb on - strandat 192.653 kb on - strandat 192.696 kb on + strandat 192.748 kb on - strandat 192.748 kb on - strandat 192.748 kb on - strandat 192.748 kb on - strandat 192.757 kb on + strandat 192.757 kb on + strandat 192.788 kb on + strandat 192.788 kb on + strandat 192.796 kb on + strandat 192.839 kb on - strandat 192.927 kb on + strandat 192.928 kb on - strandat 192.981 kb on - strand, within EX28DRAFT_3530at 193.101 kb on + strand, within EX28DRAFT_3530at 193.101 kb on + strand, within EX28DRAFT_3530at 193.104 kb on + strand, within EX28DRAFT_3530at 193.144 kb on - strand, within EX28DRAFT_3530at 193.499 kb on + strand, within EX28DRAFT_3530at 193.629 kb on - strand, within EX28DRAFT_3530at 193.809 kb on + strand, within EX28DRAFT_3530at 193.809 kb on + strand, within EX28DRAFT_3530at 193.869 kb on - strand, within EX28DRAFT_3530at 193.869 kb on - strand, within EX28DRAFT_3530at 193.869 kb on - strand, within EX28DRAFT_3530at 193.891 kb on - strand, within EX28DRAFT_3530at 193.927 kb on - strand, within EX28DRAFT_3530at 193.977 kb on + strand, within EX28DRAFT_3530at 194.058 kb on + strandat 194.058 kb on + strandat 194.059 kb on - strandat 194.059 kb on - strandat 194.059 kb on - strandat 194.186 kb on + strandat 194.187 kb on - strandat 194.190 kb on + strandat 194.289 kb on - strand, within EX28DRAFT_3531at 194.293 kb on + strand, within EX28DRAFT_3531at 194.293 kb on + strand, within EX28DRAFT_3531at 194.293 kb on + strand, within EX28DRAFT_3531at 194.294 kb on - strand, within EX28DRAFT_3531at 194.329 kb on - strand, within EX28DRAFT_3531at 194.341 kb on + strand, within EX28DRAFT_3531at 194.579 kb on - strandat 194.582 kb on + strandat 194.582 kb on + strandat 194.670 kb on + strand, within EX28DRAFT_3532at 194.670 kb on + strand, within EX28DRAFT_3532at 194.709 kb on - strand, within EX28DRAFT_3532at 194.747 kb on + strand, within EX28DRAFT_3532at 194.748 kb on - strand, within EX28DRAFT_3532at 194.748 kb on - strand, within EX28DRAFT_3532at 194.964 kb on - strand, within EX28DRAFT_3532at 195.107 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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191,912 - -0.7
191,928 + +0.5
191,928 + -0.2
191,932 + +0.1
191,932 + -0.7
191,933 - -0.1
191,933 - -0.8
191,943 - +0.5
191,985 + +0.2
191,986 - +0.5
192,053 - EX28DRAFT_3529 0.17 -0.3
192,346 - EX28DRAFT_3529 0.56 -0.3
192,408 + EX28DRAFT_3529 0.65 +1.5
192,408 + EX28DRAFT_3529 0.65 -0.2
192,409 - EX28DRAFT_3529 0.65 -0.0
192,415 + EX28DRAFT_3529 0.66 +0.6
192,415 + EX28DRAFT_3529 0.66 +0.5
192,416 - EX28DRAFT_3529 0.66 +1.6
192,416 - EX28DRAFT_3529 0.66 -0.2
192,416 - EX28DRAFT_3529 0.66 -0.3
192,416 - EX28DRAFT_3529 0.66 +0.3
192,416 - EX28DRAFT_3529 0.66 -0.4
192,416 - EX28DRAFT_3529 0.66 -0.3
192,420 + EX28DRAFT_3529 0.66 +0.0
192,420 + EX28DRAFT_3529 0.66 -0.7
192,421 - EX28DRAFT_3529 0.66 +0.2
192,504 + EX28DRAFT_3529 0.78 +0.8
192,504 + EX28DRAFT_3529 0.78 -0.3
192,504 + EX28DRAFT_3529 0.78 +0.3
192,504 + EX28DRAFT_3529 0.78 +0.1
192,505 - EX28DRAFT_3529 0.78 +0.7
192,505 - EX28DRAFT_3529 0.78 -1.1
192,505 - EX28DRAFT_3529 0.78 +0.4
192,505 - EX28DRAFT_3529 0.78 -0.2
192,505 - EX28DRAFT_3529 0.78 -0.1
192,595 + EX28DRAFT_3529 0.90 -0.0
192,595 + EX28DRAFT_3529 0.90 +0.1
192,596 - -0.3
192,653 - -0.1
192,696 + -0.6
192,748 - -0.6
192,748 - -0.5
192,748 - -0.1
192,748 - +0.3
192,757 + +0.1
192,757 + +0.2
192,788 + +0.2
192,788 + +0.4
192,796 + +1.2
192,839 - -0.1
192,927 + +0.2
192,928 - +0.3
192,981 - EX28DRAFT_3530 0.12 -0.1
193,101 + EX28DRAFT_3530 0.20 +0.3
193,101 + EX28DRAFT_3530 0.20 -0.8
193,104 + EX28DRAFT_3530 0.21 -0.3
193,144 - EX28DRAFT_3530 0.23 +0.7
193,499 + EX28DRAFT_3530 0.49 -0.6
193,629 - EX28DRAFT_3530 0.59 +0.6
193,809 + EX28DRAFT_3530 0.72 -0.2
193,809 + EX28DRAFT_3530 0.72 -0.7
193,869 - EX28DRAFT_3530 0.76 -0.2
193,869 - EX28DRAFT_3530 0.76 -0.1
193,869 - EX28DRAFT_3530 0.76 +0.1
193,891 - EX28DRAFT_3530 0.78 -1.0
193,927 - EX28DRAFT_3530 0.81 -0.4
193,977 + EX28DRAFT_3530 0.84 +0.5
194,058 + -0.5
194,058 + -0.2
194,059 - +0.4
194,059 - -0.3
194,059 - +0.8
194,186 + +0.3
194,187 - +1.1
194,190 + +0.4
194,289 - EX28DRAFT_3531 0.16 +0.5
194,293 + EX28DRAFT_3531 0.17 +0.0
194,293 + EX28DRAFT_3531 0.17 +0.1
194,293 + EX28DRAFT_3531 0.17 -0.4
194,294 - EX28DRAFT_3531 0.18 -0.4
194,329 - EX28DRAFT_3531 0.29 +0.5
194,341 + EX28DRAFT_3531 0.32 +0.4
194,579 - -0.2
194,582 + -0.5
194,582 + +0.8
194,670 + EX28DRAFT_3532 0.21 -0.0
194,670 + EX28DRAFT_3532 0.21 -2.1
194,709 - EX28DRAFT_3532 0.28 -0.9
194,747 + EX28DRAFT_3532 0.35 +0.4
194,748 - EX28DRAFT_3532 0.35 -0.5
194,748 - EX28DRAFT_3532 0.35 -0.2
194,964 - EX28DRAFT_3532 0.75 -0.2
195,107 + -0.7

Or see this region's nucleotide sequence