Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3515 and EX28DRAFT_3516 are separated by 100 nucleotides EX28DRAFT_3516 and EX28DRAFT_3517 are separated by 152 nucleotides EX28DRAFT_3517 and EX28DRAFT_3518 overlap by 8 nucleotides EX28DRAFT_3518 and EX28DRAFT_3519 overlap by 26 nucleotides
EX28DRAFT_3514: EX28DRAFT_3514 - alkylhydroperoxidase AhpD family core domain, at 179,837 to 180,316
_3514
EX28DRAFT_3515: EX28DRAFT_3515 - Transcriptional regulator, at 180,303 to 181,205
_3515
EX28DRAFT_3516: EX28DRAFT_3516 - NAD-dependent aldehyde dehydrogenases, at 181,306 to 182,721
_3516
EX28DRAFT_3517: EX28DRAFT_3517 - Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides, at 182,874 to 183,197
_3517
EX28DRAFT_3518: EX28DRAFT_3518 - ACT domain-containing protein, at 183,190 to 183,585
_3518
EX28DRAFT_3519: EX28DRAFT_3519 - Predicted transcriptional regulators, at 183,560 to 184,255
_3519
Position (kb) 181
182
183 Strain fitness (log2 ratio) -2
-1
0
1
2 at 180.385 kb on + strand at 180.385 kb on + strand at 180.385 kb on + strand at 180.386 kb on - strand at 180.423 kb on + strand, within EX28DRAFT_3515 at 180.426 kb on + strand, within EX28DRAFT_3515 at 180.467 kb on - strand, within EX28DRAFT_3515 at 180.467 kb on - strand, within EX28DRAFT_3515 at 180.467 kb on - strand, within EX28DRAFT_3515 at 180.505 kb on - strand, within EX28DRAFT_3515 at 180.598 kb on + strand, within EX28DRAFT_3515 at 180.686 kb on - strand, within EX28DRAFT_3515 at 180.785 kb on - strand, within EX28DRAFT_3515 at 180.785 kb on - strand, within EX28DRAFT_3515 at 180.858 kb on - strand, within EX28DRAFT_3515 at 180.858 kb on - strand, within EX28DRAFT_3515 at 181.173 kb on + strand at 181.174 kb on - strand at 181.205 kb on + strand at 181.205 kb on + strand at 181.303 kb on + strand at 181.304 kb on - strand at 181.304 kb on - strand at 181.304 kb on - strand at 181.304 kb on - strand at 181.304 kb on - strand at 181.304 kb on - strand at 181.305 kb on + strand at 181.305 kb on + strand at 181.306 kb on - strand at 181.306 kb on - strand at 181.329 kb on + strand at 181.329 kb on + strand at 181.330 kb on - strand at 181.580 kb on - strand, within EX28DRAFT_3516 at 181.669 kb on + strand, within EX28DRAFT_3516 at 181.669 kb on + strand, within EX28DRAFT_3516 at 181.669 kb on + strand, within EX28DRAFT_3516 at 181.670 kb on - strand, within EX28DRAFT_3516 at 182.118 kb on + strand, within EX28DRAFT_3516 at 182.300 kb on - strand, within EX28DRAFT_3516 at 182.300 kb on - strand, within EX28DRAFT_3516 at 182.515 kb on + strand, within EX28DRAFT_3516 at 182.644 kb on - strand at 182.644 kb on - strand at 182.799 kb on + strand at 182.799 kb on + strand at 182.799 kb on + strand at 182.800 kb on - strand at 183.129 kb on + strand, within EX28DRAFT_3517 at 183.130 kb on - strand, within EX28DRAFT_3517 at 183.193 kb on + strand at 183.193 kb on + strand at 183.193 kb on + strand at 183.194 kb on - strand at 183.364 kb on - strand, within EX28DRAFT_3518 at 183.522 kb on + strand, within EX28DRAFT_3518 at 183.522 kb on + strand, within EX28DRAFT_3518 at 183.523 kb on - strand, within EX28DRAFT_3518 at 183.523 kb on - strand, within EX28DRAFT_3518 at 183.559 kb on + strand at 183.559 kb on + strand at 183.559 kb on + strand at 183.560 kb on - strand at 183.560 kb on - strand at 183.577 kb on - strand at 183.577 kb on - strand at 183.586 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 180,385 + -0.5 180,385 + -0.1 180,385 + -2.2 180,386 - +0.1 180,423 + EX28DRAFT_3515 0.13 +1.1 180,426 + EX28DRAFT_3515 0.14 -0.7 180,467 - EX28DRAFT_3515 0.18 +0.2 180,467 - EX28DRAFT_3515 0.18 +0.3 180,467 - EX28DRAFT_3515 0.18 -0.1 180,505 - EX28DRAFT_3515 0.22 +0.5 180,598 + EX28DRAFT_3515 0.33 -0.2 180,686 - EX28DRAFT_3515 0.42 +1.5 180,785 - EX28DRAFT_3515 0.53 +0.0 180,785 - EX28DRAFT_3515 0.53 +0.3 180,858 - EX28DRAFT_3515 0.61 -0.4 180,858 - EX28DRAFT_3515 0.61 +0.1 181,173 + -0.6 181,174 - -0.2 181,205 + -0.7 181,205 + -0.9 181,303 + -0.4 181,304 - -0.2 181,304 - -0.2 181,304 - +1.9 181,304 - +0.3 181,304 - -0.0 181,304 - +0.0 181,305 + -0.3 181,305 + +0.8 181,306 - -0.4 181,306 - +0.5 181,329 + +1.3 181,329 + +0.2 181,330 - +0.2 181,580 - EX28DRAFT_3516 0.19 +0.2 181,669 + EX28DRAFT_3516 0.26 +0.3 181,669 + EX28DRAFT_3516 0.26 +0.0 181,669 + EX28DRAFT_3516 0.26 +0.7 181,670 - EX28DRAFT_3516 0.26 -2.1 182,118 + EX28DRAFT_3516 0.57 +0.1 182,300 - EX28DRAFT_3516 0.70 +0.2 182,300 - EX28DRAFT_3516 0.70 +0.3 182,515 + EX28DRAFT_3516 0.85 +0.1 182,644 - +0.5 182,644 - +0.4 182,799 + +0.5 182,799 + -0.6 182,799 + +0.5 182,800 - -0.3 183,129 + EX28DRAFT_3517 0.79 +0.4 183,130 - EX28DRAFT_3517 0.79 +0.2 183,193 + -0.2 183,193 + +1.3 183,193 + +0.1 183,194 - -0.5 183,364 - EX28DRAFT_3518 0.44 -1.7 183,522 + EX28DRAFT_3518 0.84 +0.1 183,522 + EX28DRAFT_3518 0.84 -1.0 183,523 - EX28DRAFT_3518 0.84 -0.1 183,523 - EX28DRAFT_3518 0.84 -0.0 183,559 + +0.5 183,559 + -0.2 183,559 + +0.2 183,560 - -1.2 183,560 - +0.0 183,577 - +0.0 183,577 - +0.2 183,586 + +0.5
Or see this region's nucleotide sequence