Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3490

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3489 and EX28DRAFT_3490 are separated by 300 nucleotidesEX28DRAFT_3490 and EX28DRAFT_3491 are separated by 44 nucleotides EX28DRAFT_3489: EX28DRAFT_3489 - Predicted restriction endonuclease, at 152,409 to 153,278 _3489 EX28DRAFT_3490: EX28DRAFT_3490 - Toxin SymE, type I toxin-antitoxin system, at 153,579 to 154,034 _3490 EX28DRAFT_3491: EX28DRAFT_3491 - tryptophanyl-tRNA synthetase (EC 6.1.1.2), at 154,079 to 155,080 _3491 Position (kb) 153 154 155Strain fitness (log2 ratio) -1 0 1 2at 152.595 kb on - strand, within EX28DRAFT_3489at 152.721 kb on - strand, within EX28DRAFT_3489at 152.743 kb on + strand, within EX28DRAFT_3489at 152.743 kb on + strand, within EX28DRAFT_3489at 152.743 kb on + strand, within EX28DRAFT_3489at 152.744 kb on - strand, within EX28DRAFT_3489at 152.744 kb on - strand, within EX28DRAFT_3489at 152.747 kb on + strand, within EX28DRAFT_3489at 152.747 kb on + strand, within EX28DRAFT_3489at 152.748 kb on - strand, within EX28DRAFT_3489at 152.748 kb on - strand, within EX28DRAFT_3489at 152.748 kb on - strand, within EX28DRAFT_3489at 152.749 kb on + strand, within EX28DRAFT_3489at 152.749 kb on + strand, within EX28DRAFT_3489at 152.750 kb on - strand, within EX28DRAFT_3489at 152.750 kb on - strand, within EX28DRAFT_3489at 152.750 kb on - strand, within EX28DRAFT_3489at 152.757 kb on + strand, within EX28DRAFT_3489at 152.757 kb on + strand, within EX28DRAFT_3489at 152.757 kb on + strand, within EX28DRAFT_3489at 152.844 kb on - strand, within EX28DRAFT_3489at 152.844 kb on - strand, within EX28DRAFT_3489at 152.844 kb on - strand, within EX28DRAFT_3489at 152.951 kb on + strand, within EX28DRAFT_3489at 152.952 kb on - strand, within EX28DRAFT_3489at 152.952 kb on - strand, within EX28DRAFT_3489at 152.969 kb on + strand, within EX28DRAFT_3489at 152.984 kb on + strand, within EX28DRAFT_3489at 153.011 kb on + strand, within EX28DRAFT_3489at 153.107 kb on + strand, within EX28DRAFT_3489at 153.301 kb on - strandat 153.301 kb on - strandat 153.431 kb on - strandat 153.435 kb on - strandat 153.451 kb on - strandat 153.488 kb on + strandat 153.489 kb on - strandat 153.781 kb on + strand, within EX28DRAFT_3490at 153.792 kb on + strand, within EX28DRAFT_3490at 153.792 kb on + strand, within EX28DRAFT_3490at 153.803 kb on - strand, within EX28DRAFT_3490at 153.896 kb on + strand, within EX28DRAFT_3490at 153.897 kb on - strand, within EX28DRAFT_3490at 153.897 kb on - strand, within EX28DRAFT_3490at 153.897 kb on - strand, within EX28DRAFT_3490at 153.926 kb on + strand, within EX28DRAFT_3490at 153.927 kb on - strand, within EX28DRAFT_3490at 153.942 kb on - strand, within EX28DRAFT_3490at 153.943 kb on + strand, within EX28DRAFT_3490at 153.947 kb on + strand, within EX28DRAFT_3490at 153.948 kb on - strand, within EX28DRAFT_3490at 154.007 kb on + strandat 154.039 kb on + strandat 154.040 kb on - strandat 154.068 kb on + strandat 154.068 kb on + strandat 154.197 kb on + strand, within EX28DRAFT_3491at 154.197 kb on + strand, within EX28DRAFT_3491at 154.197 kb on + strand, within EX28DRAFT_3491at 154.197 kb on + strand, within EX28DRAFT_3491at 154.197 kb on + strand, within EX28DRAFT_3491at 154.197 kb on + strand, within EX28DRAFT_3491at 154.197 kb on + strand, within EX28DRAFT_3491at 154.198 kb on - strand, within EX28DRAFT_3491at 154.198 kb on - strand, within EX28DRAFT_3491at 154.198 kb on - strand, within EX28DRAFT_3491at 154.198 kb on - strand, within EX28DRAFT_3491at 154.347 kb on + strand, within EX28DRAFT_3491at 154.351 kb on + strand, within EX28DRAFT_3491at 154.352 kb on - strand, within EX28DRAFT_3491at 154.414 kb on - strand, within EX28DRAFT_3491at 154.696 kb on + strand, within EX28DRAFT_3491at 154.696 kb on + strand, within EX28DRAFT_3491at 154.697 kb on - strand, within EX28DRAFT_3491at 154.792 kb on + strand, within EX28DRAFT_3491at 154.792 kb on + strand, within EX28DRAFT_3491at 154.792 kb on + strand, within EX28DRAFT_3491at 154.793 kb on - strand, within EX28DRAFT_3491at 154.794 kb on + strand, within EX28DRAFT_3491at 154.795 kb on - strand, within EX28DRAFT_3491at 154.795 kb on - strand, within EX28DRAFT_3491at 154.795 kb on - strand, within EX28DRAFT_3491

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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152,595 - EX28DRAFT_3489 0.21 +0.1
152,721 - EX28DRAFT_3489 0.36 +1.4
152,743 + EX28DRAFT_3489 0.38 -0.1
152,743 + EX28DRAFT_3489 0.38 -0.7
152,743 + EX28DRAFT_3489 0.38 -0.2
152,744 - EX28DRAFT_3489 0.39 -0.1
152,744 - EX28DRAFT_3489 0.39 -0.7
152,747 + EX28DRAFT_3489 0.39 +0.7
152,747 + EX28DRAFT_3489 0.39 -0.5
152,748 - EX28DRAFT_3489 0.39 -0.7
152,748 - EX28DRAFT_3489 0.39 -0.1
152,748 - EX28DRAFT_3489 0.39 -0.0
152,749 + EX28DRAFT_3489 0.39 +0.2
152,749 + EX28DRAFT_3489 0.39 -0.3
152,750 - EX28DRAFT_3489 0.39 -0.4
152,750 - EX28DRAFT_3489 0.39 +0.0
152,750 - EX28DRAFT_3489 0.39 -0.3
152,757 + EX28DRAFT_3489 0.40 +0.2
152,757 + EX28DRAFT_3489 0.40 +0.6
152,757 + EX28DRAFT_3489 0.40 +0.0
152,844 - EX28DRAFT_3489 0.50 -1.5
152,844 - EX28DRAFT_3489 0.50 -0.2
152,844 - EX28DRAFT_3489 0.50 +0.3
152,951 + EX28DRAFT_3489 0.62 +2.1
152,952 - EX28DRAFT_3489 0.62 +0.7
152,952 - EX28DRAFT_3489 0.62 +0.6
152,969 + EX28DRAFT_3489 0.64 -0.0
152,984 + EX28DRAFT_3489 0.66 +0.6
153,011 + EX28DRAFT_3489 0.69 +0.0
153,107 + EX28DRAFT_3489 0.80 -0.1
153,301 - -0.1
153,301 - +0.3
153,431 - +1.2
153,435 - -0.0
153,451 - +0.4
153,488 + -1.5
153,489 - +0.0
153,781 + EX28DRAFT_3490 0.44 -0.3
153,792 + EX28DRAFT_3490 0.47 -0.5
153,792 + EX28DRAFT_3490 0.47 -0.2
153,803 - EX28DRAFT_3490 0.49 +0.1
153,896 + EX28DRAFT_3490 0.70 +0.2
153,897 - EX28DRAFT_3490 0.70 -1.2
153,897 - EX28DRAFT_3490 0.70 +0.9
153,897 - EX28DRAFT_3490 0.70 +0.8
153,926 + EX28DRAFT_3490 0.76 +0.1
153,927 - EX28DRAFT_3490 0.76 +0.9
153,942 - EX28DRAFT_3490 0.80 -0.3
153,943 + EX28DRAFT_3490 0.80 +0.2
153,947 + EX28DRAFT_3490 0.81 +0.0
153,948 - EX28DRAFT_3490 0.81 -1.0
154,007 + +0.2
154,039 + -0.7
154,040 - +0.9
154,068 + -0.6
154,068 + +0.3
154,197 + EX28DRAFT_3491 0.12 -0.5
154,197 + EX28DRAFT_3491 0.12 +0.1
154,197 + EX28DRAFT_3491 0.12 -0.5
154,197 + EX28DRAFT_3491 0.12 -0.9
154,197 + EX28DRAFT_3491 0.12 -0.4
154,197 + EX28DRAFT_3491 0.12 +0.5
154,197 + EX28DRAFT_3491 0.12 +0.1
154,198 - EX28DRAFT_3491 0.12 -0.1
154,198 - EX28DRAFT_3491 0.12 +0.2
154,198 - EX28DRAFT_3491 0.12 +0.3
154,198 - EX28DRAFT_3491 0.12 +0.1
154,347 + EX28DRAFT_3491 0.27 +0.0
154,351 + EX28DRAFT_3491 0.27 +0.4
154,352 - EX28DRAFT_3491 0.27 -0.4
154,414 - EX28DRAFT_3491 0.33 -0.7
154,696 + EX28DRAFT_3491 0.62 +0.1
154,696 + EX28DRAFT_3491 0.62 -0.7
154,697 - EX28DRAFT_3491 0.62 -0.4
154,792 + EX28DRAFT_3491 0.71 +0.1
154,792 + EX28DRAFT_3491 0.71 +0.1
154,792 + EX28DRAFT_3491 0.71 -0.1
154,793 - EX28DRAFT_3491 0.71 +0.1
154,794 + EX28DRAFT_3491 0.71 +0.4
154,795 - EX28DRAFT_3491 0.71 +0.3
154,795 - EX28DRAFT_3491 0.71 +0.6
154,795 - EX28DRAFT_3491 0.71 +0.0

Or see this region's nucleotide sequence