Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3442 and EX28DRAFT_3443 are separated by 210 nucleotides EX28DRAFT_3443 and EX28DRAFT_3444 are separated by 51 nucleotides EX28DRAFT_3444 and EX28DRAFT_3445 are separated by 73 nucleotides EX28DRAFT_3445 and EX28DRAFT_3446 are separated by 12 nucleotides
EX28DRAFT_3442: EX28DRAFT_3442 - magnesium-translocating P-type ATPase, at 112,652 to 115,360
_3442
EX28DRAFT_3443: EX28DRAFT_3443 - Glycosyl hydrolase family 20, catalytic domain/Glycosyl hydrolase family 20, domain 2, at 115,571 to 117,955
_3443
EX28DRAFT_3444: EX28DRAFT_3444 - reactive intermediate/imine deaminase, at 118,007 to 118,393
_3444
EX28DRAFT_3445: EX28DRAFT_3445 - aspartate carbamoyltransferase, regulatory subunit, at 118,467 to 118,928
_3445
EX28DRAFT_3446: EX28DRAFT_3446 - aspartate carbamoyltransferase (EC 2.1.3.2), at 118,941 to 119,873
_3446
Position (kb) 115
116
117
118 Strain fitness (log2 ratio) -1
0
1
2 at 114.675 kb on + strand, within EX28DRAFT_3442 at 114.756 kb on - strand, within EX28DRAFT_3442 at 114.873 kb on - strand, within EX28DRAFT_3442 at 114.873 kb on - strand, within EX28DRAFT_3442 at 114.873 kb on - strand, within EX28DRAFT_3442 at 114.967 kb on + strand, within EX28DRAFT_3442 at 114.967 kb on + strand, within EX28DRAFT_3442 at 114.968 kb on - strand, within EX28DRAFT_3442 at 114.988 kb on + strand, within EX28DRAFT_3442 at 114.988 kb on + strand, within EX28DRAFT_3442 at 114.989 kb on - strand, within EX28DRAFT_3442 at 114.989 kb on - strand, within EX28DRAFT_3442 at 115.120 kb on + strand at 115.120 kb on + strand at 115.120 kb on + strand at 115.121 kb on - strand at 115.238 kb on + strand at 115.268 kb on + strand at 115.268 kb on + strand at 115.301 kb on + strand at 115.302 kb on - strand at 115.544 kb on - strand at 115.559 kb on + strand at 115.895 kb on + strand, within EX28DRAFT_3443 at 115.895 kb on + strand, within EX28DRAFT_3443 at 115.927 kb on + strand, within EX28DRAFT_3443 at 115.967 kb on + strand, within EX28DRAFT_3443 at 116.203 kb on + strand, within EX28DRAFT_3443 at 116.203 kb on + strand, within EX28DRAFT_3443 at 116.238 kb on - strand, within EX28DRAFT_3443 at 116.415 kb on + strand, within EX28DRAFT_3443 at 116.672 kb on + strand, within EX28DRAFT_3443 at 116.672 kb on + strand, within EX28DRAFT_3443 at 116.672 kb on + strand, within EX28DRAFT_3443 at 116.673 kb on - strand, within EX28DRAFT_3443 at 116.673 kb on - strand, within EX28DRAFT_3443 at 116.673 kb on - strand, within EX28DRAFT_3443 at 116.673 kb on - strand, within EX28DRAFT_3443 at 117.350 kb on + strand, within EX28DRAFT_3443 at 117.350 kb on + strand, within EX28DRAFT_3443 at 117.351 kb on - strand, within EX28DRAFT_3443 at 117.351 kb on - strand, within EX28DRAFT_3443 at 117.504 kb on - strand, within EX28DRAFT_3443 at 117.838 kb on + strand at 117.954 kb on - strand at 118.008 kb on + strand at 118.123 kb on - strand, within EX28DRAFT_3444 at 118.123 kb on - strand, within EX28DRAFT_3444 at 118.345 kb on - strand, within EX28DRAFT_3444 at 118.435 kb on + strand at 118.436 kb on - strand at 118.437 kb on + strand at 118.437 kb on + strand at 118.438 kb on - strand at 118.510 kb on + strand at 118.942 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 114,675 + EX28DRAFT_3442 0.75 -0.0 114,756 - EX28DRAFT_3442 0.78 +0.5 114,873 - EX28DRAFT_3442 0.82 -0.5 114,873 - EX28DRAFT_3442 0.82 +0.2 114,873 - EX28DRAFT_3442 0.82 +0.2 114,967 + EX28DRAFT_3442 0.85 -0.0 114,967 + EX28DRAFT_3442 0.85 +0.1 114,968 - EX28DRAFT_3442 0.85 +0.3 114,988 + EX28DRAFT_3442 0.86 -1.6 114,988 + EX28DRAFT_3442 0.86 +0.8 114,989 - EX28DRAFT_3442 0.86 -0.3 114,989 - EX28DRAFT_3442 0.86 -0.9 115,120 + -1.2 115,120 + +0.0 115,120 + -1.4 115,121 - -0.2 115,238 + +0.1 115,268 + +0.1 115,268 + +1.4 115,301 + -0.4 115,302 - +0.3 115,544 - -0.0 115,559 + -0.8 115,895 + EX28DRAFT_3443 0.14 +0.3 115,895 + EX28DRAFT_3443 0.14 -0.6 115,927 + EX28DRAFT_3443 0.15 +2.1 115,967 + EX28DRAFT_3443 0.17 -0.2 116,203 + EX28DRAFT_3443 0.26 -0.5 116,203 + EX28DRAFT_3443 0.26 +0.4 116,238 - EX28DRAFT_3443 0.28 +0.1 116,415 + EX28DRAFT_3443 0.35 +1.0 116,672 + EX28DRAFT_3443 0.46 +0.4 116,672 + EX28DRAFT_3443 0.46 +0.1 116,672 + EX28DRAFT_3443 0.46 -0.1 116,673 - EX28DRAFT_3443 0.46 +0.5 116,673 - EX28DRAFT_3443 0.46 -1.0 116,673 - EX28DRAFT_3443 0.46 +0.3 116,673 - EX28DRAFT_3443 0.46 -0.4 117,350 + EX28DRAFT_3443 0.75 +0.0 117,350 + EX28DRAFT_3443 0.75 +1.0 117,351 - EX28DRAFT_3443 0.75 +0.3 117,351 - EX28DRAFT_3443 0.75 +0.4 117,504 - EX28DRAFT_3443 0.81 -0.3 117,838 + -0.6 117,954 - +0.9 118,008 + -1.3 118,123 - EX28DRAFT_3444 0.30 -0.7 118,123 - EX28DRAFT_3444 0.30 +0.4 118,345 - EX28DRAFT_3444 0.87 -0.2 118,435 + +0.2 118,436 - -0.1 118,437 + +1.2 118,437 + +0.9 118,438 - +0.1 118,510 + -0.4 118,942 + +0.0
Or see this region's nucleotide sequence