Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3313 and EX28DRAFT_3314 are separated by 23 nucleotides EX28DRAFT_3314 and EX28DRAFT_3315 are separated by 177 nucleotides EX28DRAFT_3315 and EX28DRAFT_3316 are separated by 139 nucleotides EX28DRAFT_3316 and EX28DRAFT_3317 overlap by 85 nucleotides
EX28DRAFT_3313: EX28DRAFT_3313 - putative TIM-barrel protein, nifR3 family, at 613,350 to 614,315
_3313
EX28DRAFT_3314: EX28DRAFT_3314 - Factor for inversion stimulation Fis, transcriptional activator, at 614,339 to 614,635
_3314
EX28DRAFT_3315: EX28DRAFT_3315 - Protein of unknown function (DUF2556), at 614,813 to 614,977
_3315
EX28DRAFT_3316: EX28DRAFT_3316 - diguanylate cyclase (GGDEF) domain, at 615,117 to 617,198
_3316
EX28DRAFT_3317: EX28DRAFT_3317 - transcriptional regulator, TetR family, at 617,114 to 617,833
_3317
Position (kb) 615
616
617
618 Strain fitness (log2 ratio) -2
-1
0
1
2 at 614.257 kb on + strand at 614.272 kb on + strand at 614.499 kb on + strand, within EX28DRAFT_3314 at 614.637 kb on - strand at 614.647 kb on + strand at 614.726 kb on + strand at 614.727 kb on - strand at 614.768 kb on + strand at 614.768 kb on + strand at 614.769 kb on - strand at 614.771 kb on - strand at 614.771 kb on - strand at 614.817 kb on + strand at 614.821 kb on + strand at 614.822 kb on - strand at 614.822 kb on - strand at 614.822 kb on - strand at 614.822 kb on - strand at 614.826 kb on - strand at 614.895 kb on + strand, within EX28DRAFT_3315 at 614.926 kb on + strand, within EX28DRAFT_3315 at 615.060 kb on - strand at 615.106 kb on + strand at 615.132 kb on + strand at 615.132 kb on + strand at 615.132 kb on + strand at 615.183 kb on + strand at 615.184 kb on - strand at 615.260 kb on + strand at 615.336 kb on + strand, within EX28DRAFT_3316 at 615.337 kb on - strand, within EX28DRAFT_3316 at 615.358 kb on + strand, within EX28DRAFT_3316 at 615.376 kb on + strand, within EX28DRAFT_3316 at 615.421 kb on + strand, within EX28DRAFT_3316 at 615.422 kb on - strand, within EX28DRAFT_3316 at 615.476 kb on + strand, within EX28DRAFT_3316 at 615.484 kb on - strand, within EX28DRAFT_3316 at 615.484 kb on - strand, within EX28DRAFT_3316 at 615.684 kb on + strand, within EX28DRAFT_3316 at 616.025 kb on + strand, within EX28DRAFT_3316 at 616.130 kb on + strand, within EX28DRAFT_3316 at 616.253 kb on - strand, within EX28DRAFT_3316 at 616.320 kb on - strand, within EX28DRAFT_3316 at 616.338 kb on + strand, within EX28DRAFT_3316 at 616.352 kb on + strand, within EX28DRAFT_3316 at 616.471 kb on - strand, within EX28DRAFT_3316 at 616.542 kb on - strand, within EX28DRAFT_3316 at 616.831 kb on + strand, within EX28DRAFT_3316 at 616.911 kb on + strand, within EX28DRAFT_3316 at 616.994 kb on + strand at 616.995 kb on - strand at 617.126 kb on + strand at 617.149 kb on + strand at 617.149 kb on + strand at 617.150 kb on - strand at 617.150 kb on - strand at 617.150 kb on - strand at 617.150 kb on - strand at 617.150 kb on - strand at 617.180 kb on - strand at 617.196 kb on + strand at 617.196 kb on + strand at 617.197 kb on - strand at 617.243 kb on + strand, within EX28DRAFT_3317 at 617.243 kb on + strand, within EX28DRAFT_3317 at 617.282 kb on - strand, within EX28DRAFT_3317 at 617.315 kb on + strand, within EX28DRAFT_3317 at 617.316 kb on - strand, within EX28DRAFT_3317 at 617.415 kb on - strand, within EX28DRAFT_3317 at 617.467 kb on + strand, within EX28DRAFT_3317 at 617.488 kb on + strand, within EX28DRAFT_3317 at 617.537 kb on - strand, within EX28DRAFT_3317 at 617.538 kb on + strand, within EX28DRAFT_3317 at 617.538 kb on + strand, within EX28DRAFT_3317 at 617.539 kb on - strand, within EX28DRAFT_3317 at 617.711 kb on - strand, within EX28DRAFT_3317 at 617.890 kb on - strand at 618.038 kb on + strand at 618.156 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 614,257 + +0.1 614,272 + -1.7 614,499 + EX28DRAFT_3314 0.54 -1.0 614,637 - +0.9 614,647 + +0.3 614,726 + -1.7 614,727 - +0.2 614,768 + -0.9 614,768 + -0.0 614,769 - -0.4 614,771 - +0.1 614,771 - +0.8 614,817 + +0.2 614,821 + +0.1 614,822 - +0.7 614,822 - -0.3 614,822 - -1.2 614,822 - +0.2 614,826 - +0.1 614,895 + EX28DRAFT_3315 0.50 -1.9 614,926 + EX28DRAFT_3315 0.68 -0.1 615,060 - +0.5 615,106 + +0.7 615,132 + -0.2 615,132 + -0.0 615,132 + -0.2 615,183 + +0.0 615,184 - +0.9 615,260 + -0.1 615,336 + EX28DRAFT_3316 0.11 +0.1 615,337 - EX28DRAFT_3316 0.11 +1.6 615,358 + EX28DRAFT_3316 0.12 -0.1 615,376 + EX28DRAFT_3316 0.12 +1.2 615,421 + EX28DRAFT_3316 0.15 +0.3 615,422 - EX28DRAFT_3316 0.15 -1.5 615,476 + EX28DRAFT_3316 0.17 +0.0 615,484 - EX28DRAFT_3316 0.18 +0.1 615,484 - EX28DRAFT_3316 0.18 -1.3 615,684 + EX28DRAFT_3316 0.27 -0.6 616,025 + EX28DRAFT_3316 0.44 -0.2 616,130 + EX28DRAFT_3316 0.49 +1.6 616,253 - EX28DRAFT_3316 0.55 +0.1 616,320 - EX28DRAFT_3316 0.58 +0.5 616,338 + EX28DRAFT_3316 0.59 +0.2 616,352 + EX28DRAFT_3316 0.59 +2.4 616,471 - EX28DRAFT_3316 0.65 -1.0 616,542 - EX28DRAFT_3316 0.68 +0.2 616,831 + EX28DRAFT_3316 0.82 -0.2 616,911 + EX28DRAFT_3316 0.86 +0.7 616,994 + -0.2 616,995 - +0.3 617,126 + +0.2 617,149 + -0.5 617,149 + +0.2 617,150 - +0.2 617,150 - -0.0 617,150 - -0.2 617,150 - -0.1 617,150 - +0.9 617,180 - +0.1 617,196 + +0.3 617,196 + +0.3 617,197 - -0.1 617,243 + EX28DRAFT_3317 0.18 -0.3 617,243 + EX28DRAFT_3317 0.18 +0.3 617,282 - EX28DRAFT_3317 0.23 +0.3 617,315 + EX28DRAFT_3317 0.28 -1.0 617,316 - EX28DRAFT_3317 0.28 -0.2 617,415 - EX28DRAFT_3317 0.42 +0.3 617,467 + EX28DRAFT_3317 0.49 -0.7 617,488 + EX28DRAFT_3317 0.52 +1.1 617,537 - EX28DRAFT_3317 0.59 -0.4 617,538 + EX28DRAFT_3317 0.59 +0.4 617,538 + EX28DRAFT_3317 0.59 +0.1 617,539 - EX28DRAFT_3317 0.59 -0.1 617,711 - EX28DRAFT_3317 0.83 -0.6 617,890 - -0.2 618,038 + -0.7 618,156 + +0.1
Or see this region's nucleotide sequence