Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3170

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3168 and EX28DRAFT_3169 are separated by 252 nucleotidesEX28DRAFT_3169 and EX28DRAFT_3170 are separated by 69 nucleotidesEX28DRAFT_3170 and EX28DRAFT_3171 are separated by 106 nucleotidesEX28DRAFT_3171 and EX28DRAFT_3172 are separated by 46 nucleotides EX28DRAFT_3168: EX28DRAFT_3168 - YqjK-like protein, at 469,466 to 469,762 _3168 EX28DRAFT_3169: EX28DRAFT_3169 - Predicted membrane protein, at 470,015 to 470,407 _3169 EX28DRAFT_3170: EX28DRAFT_3170 - Predicted glutathione S-transferase, at 470,477 to 471,463 _3170 EX28DRAFT_3171: EX28DRAFT_3171 - Predicted membrane protein, at 471,570 to 471,935 _3171 EX28DRAFT_3172: EX28DRAFT_3172 - Transcriptional regulator, at 471,982 to 472,884 _3172 Position (kb) 470 471 472Strain fitness (log2 ratio) -2 -1 0 1at 469.502 kb on + strand, within EX28DRAFT_3168at 469.502 kb on + strand, within EX28DRAFT_3168at 469.503 kb on - strand, within EX28DRAFT_3168at 469.597 kb on + strand, within EX28DRAFT_3168at 469.672 kb on + strand, within EX28DRAFT_3168at 470.123 kb on + strand, within EX28DRAFT_3169at 470.123 kb on + strand, within EX28DRAFT_3169at 470.123 kb on + strand, within EX28DRAFT_3169at 470.124 kb on - strand, within EX28DRAFT_3169at 470.124 kb on - strand, within EX28DRAFT_3169at 470.124 kb on - strand, within EX28DRAFT_3169at 470.124 kb on - strand, within EX28DRAFT_3169at 470.124 kb on - strand, within EX28DRAFT_3169at 470.125 kb on + strand, within EX28DRAFT_3169at 470.125 kb on + strand, within EX28DRAFT_3169at 470.125 kb on + strand, within EX28DRAFT_3169at 470.396 kb on - strandat 470.396 kb on - strandat 470.405 kb on + strandat 470.406 kb on - strandat 470.414 kb on + strandat 470.415 kb on - strandat 470.442 kb on + strandat 470.443 kb on - strandat 470.648 kb on + strand, within EX28DRAFT_3170at 470.648 kb on + strand, within EX28DRAFT_3170at 470.649 kb on - strand, within EX28DRAFT_3170at 470.701 kb on + strand, within EX28DRAFT_3170at 470.702 kb on - strand, within EX28DRAFT_3170at 470.702 kb on - strand, within EX28DRAFT_3170at 470.835 kb on - strand, within EX28DRAFT_3170at 470.855 kb on + strand, within EX28DRAFT_3170at 470.984 kb on + strand, within EX28DRAFT_3170at 471.092 kb on + strand, within EX28DRAFT_3170at 471.093 kb on - strand, within EX28DRAFT_3170at 471.233 kb on + strand, within EX28DRAFT_3170at 471.234 kb on - strand, within EX28DRAFT_3170at 471.247 kb on + strand, within EX28DRAFT_3170at 471.248 kb on - strand, within EX28DRAFT_3170at 471.276 kb on - strand, within EX28DRAFT_3170at 471.308 kb on + strand, within EX28DRAFT_3170at 471.397 kb on + strandat 471.400 kb on + strandat 471.400 kb on + strandat 471.401 kb on - strandat 471.401 kb on - strandat 471.401 kb on - strandat 471.401 kb on - strandat 471.465 kb on + strandat 471.465 kb on + strandat 471.466 kb on - strandat 471.466 kb on - strandat 471.513 kb on - strandat 471.584 kb on - strandat 471.590 kb on - strandat 471.600 kb on + strandat 471.601 kb on - strandat 471.601 kb on - strandat 471.601 kb on - strandat 471.637 kb on - strand, within EX28DRAFT_3171at 471.744 kb on + strand, within EX28DRAFT_3171at 471.745 kb on - strand, within EX28DRAFT_3171at 471.968 kb on + strandat 471.976 kb on - strandat 471.991 kb on - strandat 471.991 kb on - strandat 471.991 kb on - strandat 471.992 kb on + strandat 471.993 kb on - strandat 471.993 kb on - strandat 471.993 kb on - strandat 472.072 kb on - strandat 472.072 kb on - strandat 472.092 kb on - strand, within EX28DRAFT_3172at 472.230 kb on + strand, within EX28DRAFT_3172at 472.296 kb on - strand, within EX28DRAFT_3172at 472.365 kb on - strand, within EX28DRAFT_3172at 472.383 kb on - strand, within EX28DRAFT_3172

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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469,502 + EX28DRAFT_3168 0.12 -0.0
469,502 + EX28DRAFT_3168 0.12 +0.7
469,503 - EX28DRAFT_3168 0.12 -0.1
469,597 + EX28DRAFT_3168 0.44 -0.1
469,672 + EX28DRAFT_3168 0.69 -0.4
470,123 + EX28DRAFT_3169 0.27 -0.1
470,123 + EX28DRAFT_3169 0.27 -0.4
470,123 + EX28DRAFT_3169 0.27 -0.3
470,124 - EX28DRAFT_3169 0.28 -0.2
470,124 - EX28DRAFT_3169 0.28 -0.9
470,124 - EX28DRAFT_3169 0.28 -1.5
470,124 - EX28DRAFT_3169 0.28 +1.5
470,124 - EX28DRAFT_3169 0.28 -0.1
470,125 + EX28DRAFT_3169 0.28 +0.2
470,125 + EX28DRAFT_3169 0.28 +0.0
470,125 + EX28DRAFT_3169 0.28 +0.5
470,396 - -0.3
470,396 - -0.2
470,405 + +0.5
470,406 - -0.5
470,414 + -0.6
470,415 - -0.2
470,442 + -0.4
470,443 - -0.2
470,648 + EX28DRAFT_3170 0.17 +0.3
470,648 + EX28DRAFT_3170 0.17 -0.5
470,649 - EX28DRAFT_3170 0.17 +0.5
470,701 + EX28DRAFT_3170 0.23 +0.8
470,702 - EX28DRAFT_3170 0.23 +0.4
470,702 - EX28DRAFT_3170 0.23 -0.4
470,835 - EX28DRAFT_3170 0.36 -0.4
470,855 + EX28DRAFT_3170 0.38 +0.3
470,984 + EX28DRAFT_3170 0.51 +0.6
471,092 + EX28DRAFT_3170 0.62 -1.1
471,093 - EX28DRAFT_3170 0.62 +0.7
471,233 + EX28DRAFT_3170 0.77 +0.6
471,234 - EX28DRAFT_3170 0.77 +0.3
471,247 + EX28DRAFT_3170 0.78 +0.1
471,248 - EX28DRAFT_3170 0.78 -1.6
471,276 - EX28DRAFT_3170 0.81 +1.0
471,308 + EX28DRAFT_3170 0.84 -0.3
471,397 + +0.2
471,400 + -0.0
471,400 + -0.4
471,401 - +0.4
471,401 - +0.1
471,401 - -0.2
471,401 - -0.1
471,465 + -0.5
471,465 + +0.3
471,466 - -0.0
471,466 - -0.0
471,513 - -0.4
471,584 - -2.0
471,590 - +0.6
471,600 + -0.2
471,601 - -0.4
471,601 - +0.5
471,601 - -0.7
471,637 - EX28DRAFT_3171 0.18 -0.1
471,744 + EX28DRAFT_3171 0.48 -0.9
471,745 - EX28DRAFT_3171 0.48 +1.0
471,968 + -0.4
471,976 - +0.1
471,991 - +0.1
471,991 - -0.3
471,991 - +0.8
471,992 + +0.3
471,993 - +0.2
471,993 - -0.3
471,993 - -0.2
472,072 - -0.2
472,072 - -0.2
472,092 - EX28DRAFT_3172 0.12 +0.2
472,230 + EX28DRAFT_3172 0.27 +0.3
472,296 - EX28DRAFT_3172 0.35 -0.0
472,365 - EX28DRAFT_3172 0.42 -0.7
472,383 - EX28DRAFT_3172 0.44 -0.1

Or see this region's nucleotide sequence