Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3140 and EX28DRAFT_3141 are separated by 38 nucleotides EX28DRAFT_3141 and EX28DRAFT_3142 are separated by 42 nucleotides EX28DRAFT_3142 and EX28DRAFT_3143 are separated by 12 nucleotides EX28DRAFT_3143 and EX28DRAFT_3144 are separated by 55 nucleotides
EX28DRAFT_3140: EX28DRAFT_3140 - diamine aminotransferase apoenzyme (EC 2.6.1.29), at 441,135 to 442,541
_3140
EX28DRAFT_3141: EX28DRAFT_3141 - transcriptional regulator, XRE family with cupin sensor, at 442,580 to 443,182
_3141
EX28DRAFT_3142: EX28DRAFT_3142 - Uncharacterized conserved protein, at 443,225 to 443,911
_3142
EX28DRAFT_3143: EX28DRAFT_3143 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase, at 443,924 to 444,772
_3143
EX28DRAFT_3144: EX28DRAFT_3144 - Uncharacterized conserved protein, at 444,828 to 445,121
_3144
Position (kb) 443
444 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 442.279 kb on + strand, within EX28DRAFT_3140 at 442.367 kb on + strand, within EX28DRAFT_3140 at 442.367 kb on + strand, within EX28DRAFT_3140 at 442.522 kb on + strand at 442.522 kb on + strand at 442.523 kb on - strand at 442.610 kb on - strand at 442.722 kb on - strand, within EX28DRAFT_3141 at 442.814 kb on + strand, within EX28DRAFT_3141 at 442.815 kb on - strand, within EX28DRAFT_3141 at 443.042 kb on - strand, within EX28DRAFT_3141 at 443.042 kb on - strand, within EX28DRAFT_3141 at 443.224 kb on + strand at 443.224 kb on + strand at 443.224 kb on + strand at 443.225 kb on - strand at 443.225 kb on - strand at 443.225 kb on - strand at 443.247 kb on + strand at 443.247 kb on + strand at 443.247 kb on + strand at 443.530 kb on + strand, within EX28DRAFT_3142 at 443.530 kb on + strand, within EX28DRAFT_3142 at 443.534 kb on + strand, within EX28DRAFT_3142 at 443.534 kb on + strand, within EX28DRAFT_3142 at 443.534 kb on + strand, within EX28DRAFT_3142 at 443.534 kb on + strand, within EX28DRAFT_3142 at 443.534 kb on + strand, within EX28DRAFT_3142 at 443.534 kb on + strand, within EX28DRAFT_3142 at 443.534 kb on + strand, within EX28DRAFT_3142 at 443.534 kb on + strand, within EX28DRAFT_3142 at 443.535 kb on - strand, within EX28DRAFT_3142 at 443.535 kb on - strand, within EX28DRAFT_3142 at 443.535 kb on - strand, within EX28DRAFT_3142 at 443.535 kb on - strand, within EX28DRAFT_3142 at 443.535 kb on - strand, within EX28DRAFT_3142 at 443.641 kb on + strand, within EX28DRAFT_3142 at 443.693 kb on - strand, within EX28DRAFT_3142 at 443.779 kb on + strand, within EX28DRAFT_3142 at 443.779 kb on + strand, within EX28DRAFT_3142 at 443.780 kb on - strand, within EX28DRAFT_3142 at 443.789 kb on - strand, within EX28DRAFT_3142 at 443.909 kb on + strand at 443.909 kb on + strand at 444.062 kb on + strand, within EX28DRAFT_3143 at 444.063 kb on - strand, within EX28DRAFT_3143 at 444.068 kb on + strand, within EX28DRAFT_3143 at 444.315 kb on - strand, within EX28DRAFT_3143 at 444.315 kb on - strand, within EX28DRAFT_3143 at 444.360 kb on + strand, within EX28DRAFT_3143 at 444.385 kb on + strand, within EX28DRAFT_3143 at 444.385 kb on + strand, within EX28DRAFT_3143 at 444.387 kb on + strand, within EX28DRAFT_3143 at 444.388 kb on - strand, within EX28DRAFT_3143 at 444.630 kb on - strand, within EX28DRAFT_3143 at 444.635 kb on - strand, within EX28DRAFT_3143 at 444.743 kb on - strand at 444.817 kb on + strand at 444.818 kb on - strand at 444.818 kb on - strand at 444.818 kb on - strand at 444.819 kb on + strand at 444.863 kb on + strand, within EX28DRAFT_3144 at 444.863 kb on + strand, within EX28DRAFT_3144 at 444.863 kb on + strand, within EX28DRAFT_3144 at 444.864 kb on - strand, within EX28DRAFT_3144 at 444.910 kb on + strand, within EX28DRAFT_3144 at 444.911 kb on - strand, within EX28DRAFT_3144
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 442,279 + EX28DRAFT_3140 0.81 +0.3 442,367 + EX28DRAFT_3140 0.88 -0.2 442,367 + EX28DRAFT_3140 0.88 +0.5 442,522 + -0.2 442,522 + +0.1 442,523 - +0.4 442,610 - -0.1 442,722 - EX28DRAFT_3141 0.24 -0.5 442,814 + EX28DRAFT_3141 0.39 +0.5 442,815 - EX28DRAFT_3141 0.39 +0.0 443,042 - EX28DRAFT_3141 0.77 -0.3 443,042 - EX28DRAFT_3141 0.77 -2.3 443,224 + -0.4 443,224 + +0.6 443,224 + +0.4 443,225 - -0.1 443,225 - +0.2 443,225 - +0.1 443,247 + +0.2 443,247 + -0.9 443,247 + +1.2 443,530 + EX28DRAFT_3142 0.44 -0.1 443,530 + EX28DRAFT_3142 0.44 +0.3 443,534 + EX28DRAFT_3142 0.45 -1.1 443,534 + EX28DRAFT_3142 0.45 +0.4 443,534 + EX28DRAFT_3142 0.45 -0.9 443,534 + EX28DRAFT_3142 0.45 -0.8 443,534 + EX28DRAFT_3142 0.45 +0.7 443,534 + EX28DRAFT_3142 0.45 +0.2 443,534 + EX28DRAFT_3142 0.45 +0.1 443,534 + EX28DRAFT_3142 0.45 +0.1 443,535 - EX28DRAFT_3142 0.45 +0.2 443,535 - EX28DRAFT_3142 0.45 -0.2 443,535 - EX28DRAFT_3142 0.45 +0.4 443,535 - EX28DRAFT_3142 0.45 -0.5 443,535 - EX28DRAFT_3142 0.45 +0.2 443,641 + EX28DRAFT_3142 0.61 -0.3 443,693 - EX28DRAFT_3142 0.68 +0.6 443,779 + EX28DRAFT_3142 0.81 -0.7 443,779 + EX28DRAFT_3142 0.81 -0.1 443,780 - EX28DRAFT_3142 0.81 -0.5 443,789 - EX28DRAFT_3142 0.82 -0.2 443,909 + -0.3 443,909 + -0.9 444,062 + EX28DRAFT_3143 0.16 -0.2 444,063 - EX28DRAFT_3143 0.16 -0.9 444,068 + EX28DRAFT_3143 0.17 +0.0 444,315 - EX28DRAFT_3143 0.46 -0.2 444,315 - EX28DRAFT_3143 0.46 -1.4 444,360 + EX28DRAFT_3143 0.51 +0.5 444,385 + EX28DRAFT_3143 0.54 -0.9 444,385 + EX28DRAFT_3143 0.54 -0.1 444,387 + EX28DRAFT_3143 0.55 +0.0 444,388 - EX28DRAFT_3143 0.55 +0.4 444,630 - EX28DRAFT_3143 0.83 -0.8 444,635 - EX28DRAFT_3143 0.84 +0.1 444,743 - +0.0 444,817 + +0.1 444,818 - -1.2 444,818 - +0.3 444,818 - +0.1 444,819 + -0.1 444,863 + EX28DRAFT_3144 0.12 -2.9 444,863 + EX28DRAFT_3144 0.12 +0.3 444,863 + EX28DRAFT_3144 0.12 -0.9 444,864 - EX28DRAFT_3144 0.12 +0.7 444,910 + EX28DRAFT_3144 0.28 +0.5 444,911 - EX28DRAFT_3144 0.28 -1.0
Or see this region's nucleotide sequence