Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3132 and EX28DRAFT_3133 are separated by 55 nucleotides EX28DRAFT_3133 and EX28DRAFT_3134 overlap by 4 nucleotides EX28DRAFT_3134 and EX28DRAFT_3135 are separated by 510 nucleotides
EX28DRAFT_3132: EX28DRAFT_3132 - Bacteriophage CI repressor helix-turn-helix domain, at 432,826 to 433,401
_3132
EX28DRAFT_3133: EX28DRAFT_3133 - SmpA / OmlA family, at 433,457 to 433,804
_3133
EX28DRAFT_3134: EX28DRAFT_3134 - hypothetical protein, at 433,801 to 434,226
_3134
EX28DRAFT_3135: EX28DRAFT_3135 - hypothetical protein, at 434,737 to 435,906
_3135
Position (kb) 433
434
435 Strain fitness (log2 ratio) -2
-1
0
1
2 at 433.470 kb on + strand at 433.554 kb on + strand, within EX28DRAFT_3133 at 433.554 kb on + strand, within EX28DRAFT_3133 at 433.555 kb on - strand, within EX28DRAFT_3133 at 433.558 kb on + strand, within EX28DRAFT_3133 at 433.558 kb on + strand, within EX28DRAFT_3133 at 433.582 kb on + strand, within EX28DRAFT_3133 at 433.582 kb on + strand, within EX28DRAFT_3133 at 433.582 kb on + strand, within EX28DRAFT_3133 at 433.582 kb on + strand, within EX28DRAFT_3133 at 433.583 kb on - strand, within EX28DRAFT_3133 at 433.583 kb on - strand, within EX28DRAFT_3133 at 433.583 kb on - strand, within EX28DRAFT_3133 at 433.604 kb on - strand, within EX28DRAFT_3133 at 433.604 kb on - strand, within EX28DRAFT_3133 at 433.604 kb on - strand, within EX28DRAFT_3133 at 433.619 kb on - strand, within EX28DRAFT_3133 at 433.619 kb on - strand, within EX28DRAFT_3133 at 433.706 kb on - strand, within EX28DRAFT_3133 at 433.726 kb on + strand, within EX28DRAFT_3133 at 433.738 kb on - strand, within EX28DRAFT_3133 at 433.830 kb on + strand at 433.953 kb on + strand, within EX28DRAFT_3134 at 434.093 kb on + strand, within EX28DRAFT_3134 at 434.151 kb on - strand, within EX28DRAFT_3134 at 434.159 kb on + strand, within EX28DRAFT_3134 at 434.285 kb on - strand at 434.318 kb on + strand at 434.322 kb on + strand at 434.508 kb on + strand at 434.508 kb on + strand at 434.509 kb on - strand at 434.510 kb on + strand at 434.696 kb on - strand at 434.714 kb on + strand at 434.715 kb on - strand at 434.715 kb on - strand at 434.888 kb on - strand, within EX28DRAFT_3135 at 434.888 kb on - strand, within EX28DRAFT_3135 at 435.068 kb on - strand, within EX28DRAFT_3135 at 435.114 kb on + strand, within EX28DRAFT_3135 at 435.196 kb on + strand, within EX28DRAFT_3135
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 433,470 + +0.5 433,554 + EX28DRAFT_3133 0.28 +0.1 433,554 + EX28DRAFT_3133 0.28 +0.5 433,555 - EX28DRAFT_3133 0.28 +0.2 433,558 + EX28DRAFT_3133 0.29 -1.1 433,558 + EX28DRAFT_3133 0.29 +0.3 433,582 + EX28DRAFT_3133 0.36 -0.1 433,582 + EX28DRAFT_3133 0.36 +0.3 433,582 + EX28DRAFT_3133 0.36 -0.2 433,582 + EX28DRAFT_3133 0.36 +0.3 433,583 - EX28DRAFT_3133 0.36 +1.3 433,583 - EX28DRAFT_3133 0.36 +0.2 433,583 - EX28DRAFT_3133 0.36 -1.3 433,604 - EX28DRAFT_3133 0.42 +0.2 433,604 - EX28DRAFT_3133 0.42 +0.0 433,604 - EX28DRAFT_3133 0.42 +0.3 433,619 - EX28DRAFT_3133 0.47 -0.4 433,619 - EX28DRAFT_3133 0.47 +0.2 433,706 - EX28DRAFT_3133 0.72 -0.5 433,726 + EX28DRAFT_3133 0.77 -0.4 433,738 - EX28DRAFT_3133 0.81 +0.1 433,830 + +0.3 433,953 + EX28DRAFT_3134 0.36 -0.9 434,093 + EX28DRAFT_3134 0.69 -0.4 434,151 - EX28DRAFT_3134 0.82 +0.1 434,159 + EX28DRAFT_3134 0.84 +0.5 434,285 - -0.4 434,318 + +0.3 434,322 + +0.2 434,508 + +0.0 434,508 + -0.8 434,509 - +0.3 434,510 + -0.1 434,696 - -0.3 434,714 + +0.0 434,715 - +0.6 434,715 - +2.1 434,888 - EX28DRAFT_3135 0.13 -0.9 434,888 - EX28DRAFT_3135 0.13 +0.5 435,068 - EX28DRAFT_3135 0.28 -2.0 435,114 + EX28DRAFT_3135 0.32 +0.3 435,196 + EX28DRAFT_3135 0.39 -0.6
Or see this region's nucleotide sequence