Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3082 and EX28DRAFT_3083 are separated by 226 nucleotides EX28DRAFT_3083 and EX28DRAFT_3084 are separated by 60 nucleotides EX28DRAFT_3084 and EX28DRAFT_3085 are separated by 10 nucleotides EX28DRAFT_3085 and EX28DRAFT_3086 are separated by 105 nucleotides
EX28DRAFT_3082: EX28DRAFT_3082 - Uncharacterized conserved protein, at 394,203 to 395,504
_3082
EX28DRAFT_3083: EX28DRAFT_3083 - SH3 domain protein, at 395,731 to 396,354
_3083
EX28DRAFT_3084: EX28DRAFT_3084 - tRNA nucleotidyltransferase/poly(A) polymerase, at 396,415 to 397,656
_3084
EX28DRAFT_3085: EX28DRAFT_3085 - undecaprenyl-diphosphatase UppP, at 397,667 to 398,488
_3085
EX28DRAFT_3086: EX28DRAFT_3086 - dihydroneopterin aldolase, at 398,594 to 398,962
_3086
Position (kb) 396
397
398 Strain fitness (log2 ratio) -2
-1
0
1
2 at 395.432 kb on + strand at 395.485 kb on - strand at 395.574 kb on + strand at 395.575 kb on - strand at 395.575 kb on - strand at 395.578 kb on + strand at 395.578 kb on + strand at 395.579 kb on - strand at 395.579 kb on - strand at 395.579 kb on - strand at 395.579 kb on - strand at 395.581 kb on + strand at 395.582 kb on - strand at 395.582 kb on - strand at 395.582 kb on - strand at 395.625 kb on - strand at 395.632 kb on + strand at 395.699 kb on + strand at 395.699 kb on + strand at 395.700 kb on - strand at 395.711 kb on - strand at 395.723 kb on - strand at 395.729 kb on + strand at 395.730 kb on - strand at 395.740 kb on - strand at 395.760 kb on + strand at 395.761 kb on - strand at 395.765 kb on + strand at 395.766 kb on - strand at 395.840 kb on + strand, within EX28DRAFT_3083 at 395.845 kb on - strand, within EX28DRAFT_3083 at 395.845 kb on - strand, within EX28DRAFT_3083 at 395.860 kb on - strand, within EX28DRAFT_3083 at 396.197 kb on + strand, within EX28DRAFT_3083 at 396.255 kb on + strand, within EX28DRAFT_3083 at 396.256 kb on - strand, within EX28DRAFT_3083 at 396.256 kb on - strand, within EX28DRAFT_3083 at 396.256 kb on - strand, within EX28DRAFT_3083 at 396.256 kb on - strand, within EX28DRAFT_3083 at 396.259 kb on + strand, within EX28DRAFT_3083 at 396.260 kb on - strand, within EX28DRAFT_3083 at 396.352 kb on + strand at 396.352 kb on + strand at 396.353 kb on - strand at 396.375 kb on + strand at 396.375 kb on + strand at 396.375 kb on + strand at 396.375 kb on + strand at 396.376 kb on - strand at 396.376 kb on - strand at 396.376 kb on - strand at 396.379 kb on + strand at 396.380 kb on - strand at 396.380 kb on - strand at 397.683 kb on + strand at 397.683 kb on + strand at 397.683 kb on + strand at 397.735 kb on + strand at 397.736 kb on - strand at 397.842 kb on + strand, within EX28DRAFT_3085 at 397.849 kb on + strand, within EX28DRAFT_3085 at 397.850 kb on - strand, within EX28DRAFT_3085 at 397.850 kb on - strand, within EX28DRAFT_3085 at 397.852 kb on - strand, within EX28DRAFT_3085 at 397.852 kb on - strand, within EX28DRAFT_3085 at 398.014 kb on + strand, within EX28DRAFT_3085 at 398.028 kb on + strand, within EX28DRAFT_3085 at 398.029 kb on - strand, within EX28DRAFT_3085 at 398.096 kb on + strand, within EX28DRAFT_3085 at 398.097 kb on - strand, within EX28DRAFT_3085 at 398.118 kb on + strand, within EX28DRAFT_3085 at 398.119 kb on - strand, within EX28DRAFT_3085 at 398.206 kb on + strand, within EX28DRAFT_3085 at 398.207 kb on - strand, within EX28DRAFT_3085 at 398.320 kb on + strand, within EX28DRAFT_3085 at 398.398 kb on + strand, within EX28DRAFT_3085 at 398.399 kb on - strand, within EX28DRAFT_3085 at 398.454 kb on - strand at 398.490 kb on + strand at 398.491 kb on - strand at 398.491 kb on - strand at 398.491 kb on - strand at 398.491 kb on - strand at 398.546 kb on + strand at 398.546 kb on + strand at 398.546 kb on + strand at 398.547 kb on - strand at 398.547 kb on - strand at 398.566 kb on - strand at 398.570 kb on + strand at 398.596 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 395,432 + +0.3 395,485 - +1.5 395,574 + +0.0 395,575 - +0.5 395,575 - +0.0 395,578 + -0.0 395,578 + -0.2 395,579 - -0.3 395,579 - +1.6 395,579 - -0.4 395,579 - -0.3 395,581 + -0.6 395,582 - -0.3 395,582 - +0.1 395,582 - +0.6 395,625 - +0.8 395,632 + +0.2 395,699 + +0.4 395,699 + +0.9 395,700 - +0.3 395,711 - +0.0 395,723 - -0.1 395,729 + +0.4 395,730 - -0.8 395,740 - -0.9 395,760 + +0.7 395,761 - -1.4 395,765 + -0.4 395,766 - -0.3 395,840 + EX28DRAFT_3083 0.17 -0.0 395,845 - EX28DRAFT_3083 0.18 +0.7 395,845 - EX28DRAFT_3083 0.18 +0.1 395,860 - EX28DRAFT_3083 0.21 -0.4 396,197 + EX28DRAFT_3083 0.75 +1.2 396,255 + EX28DRAFT_3083 0.84 -0.3 396,256 - EX28DRAFT_3083 0.84 -0.9 396,256 - EX28DRAFT_3083 0.84 +0.3 396,256 - EX28DRAFT_3083 0.84 -0.1 396,256 - EX28DRAFT_3083 0.84 +0.6 396,259 + EX28DRAFT_3083 0.85 +0.3 396,260 - EX28DRAFT_3083 0.85 -0.1 396,352 + +0.7 396,352 + +0.4 396,353 - +0.5 396,375 + +2.0 396,375 + -0.3 396,375 + +0.8 396,375 + -0.4 396,376 - -0.7 396,376 - -0.4 396,376 - -0.3 396,379 + -0.4 396,380 - -0.0 396,380 - -0.4 397,683 + -0.7 397,683 + +0.1 397,683 + -0.6 397,735 + -0.7 397,736 - -0.7 397,842 + EX28DRAFT_3085 0.21 -1.1 397,849 + EX28DRAFT_3085 0.22 -0.0 397,850 - EX28DRAFT_3085 0.22 +0.8 397,850 - EX28DRAFT_3085 0.22 +0.2 397,852 - EX28DRAFT_3085 0.23 -1.2 397,852 - EX28DRAFT_3085 0.23 -0.7 398,014 + EX28DRAFT_3085 0.42 -0.6 398,028 + EX28DRAFT_3085 0.44 -0.9 398,029 - EX28DRAFT_3085 0.44 +1.0 398,096 + EX28DRAFT_3085 0.52 -0.6 398,097 - EX28DRAFT_3085 0.52 -0.3 398,118 + EX28DRAFT_3085 0.55 -0.9 398,119 - EX28DRAFT_3085 0.55 -0.3 398,206 + EX28DRAFT_3085 0.66 -0.1 398,207 - EX28DRAFT_3085 0.66 +0.2 398,320 + EX28DRAFT_3085 0.79 -1.9 398,398 + EX28DRAFT_3085 0.89 -0.7 398,399 - EX28DRAFT_3085 0.89 -0.9 398,454 - -0.7 398,490 + -2.6 398,491 - +0.0 398,491 - -0.2 398,491 - +0.5 398,491 - -0.1 398,546 + +0.2 398,546 + -0.7 398,546 + -0.1 398,547 - -0.2 398,547 - -0.0 398,566 - +0.4 398,570 + -1.0 398,596 - -0.2
Or see this region's nucleotide sequence