Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3071 and EX28DRAFT_3072 overlap by 4 nucleotides EX28DRAFT_3072 and EX28DRAFT_3073 are separated by 204 nucleotides EX28DRAFT_3073 and EX28DRAFT_3074 are separated by 190 nucleotides EX28DRAFT_3074 and EX28DRAFT_3075 are separated by 2 nucleotides
EX28DRAFT_3071: EX28DRAFT_3071 - Uncharacterized protein conserved in bacteria, at 381,808 to 382,230
_3071
EX28DRAFT_3072: EX28DRAFT_3072 - nudix-type nucleoside diphosphatase, YffH/AdpP family, at 382,227 to 382,859
_3072
EX28DRAFT_3073: EX28DRAFT_3073 - type I secretion outer membrane protein, TolC family, at 383,064 to 384,542
_3073
EX28DRAFT_3074: EX28DRAFT_3074 - Predicted integral membrane protein, at 384,733 to 385,401
_3074
EX28DRAFT_3075: EX28DRAFT_3075 - Glutathionylspermidine synthase, at 385,404 to 386,564
_3075
Position (kb)
383
384
385 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 382.330 kb on + strand, within EX28DRAFT_3072 at 382.331 kb on - strand, within EX28DRAFT_3072 at 382.331 kb on - strand, within EX28DRAFT_3072 at 382.431 kb on - strand, within EX28DRAFT_3072 at 382.575 kb on + strand, within EX28DRAFT_3072 at 382.671 kb on + strand, within EX28DRAFT_3072 at 382.812 kb on + strand at 382.813 kb on - strand at 382.924 kb on + strand at 382.925 kb on - strand at 382.930 kb on + strand at 382.930 kb on + strand at 382.930 kb on + strand at 382.930 kb on + strand at 382.930 kb on + strand at 382.931 kb on - strand at 382.932 kb on + strand at 382.933 kb on - strand at 382.936 kb on + strand at 382.986 kb on + strand at 383.021 kb on + strand at 383.025 kb on + strand at 383.040 kb on - strand at 383.180 kb on - strand at 383.184 kb on - strand at 383.274 kb on - strand, within EX28DRAFT_3073 at 383.277 kb on + strand, within EX28DRAFT_3073 at 383.361 kb on - strand, within EX28DRAFT_3073 at 383.539 kb on + strand, within EX28DRAFT_3073 at 383.910 kb on + strand, within EX28DRAFT_3073 at 384.039 kb on + strand, within EX28DRAFT_3073 at 384.221 kb on + strand, within EX28DRAFT_3073 at 384.221 kb on + strand, within EX28DRAFT_3073 at 384.222 kb on - strand, within EX28DRAFT_3073 at 384.258 kb on + strand, within EX28DRAFT_3073 at 384.259 kb on - strand, within EX28DRAFT_3073 at 384.444 kb on + strand at 384.447 kb on - strand at 384.525 kb on - strand at 384.537 kb on - strand at 384.540 kb on + strand at 384.639 kb on + strand at 384.639 kb on + strand at 384.705 kb on + strand at 384.750 kb on + strand at 384.829 kb on - strand, within EX28DRAFT_3074 at 384.829 kb on - strand, within EX28DRAFT_3074 at 384.829 kb on - strand, within EX28DRAFT_3074 at 384.961 kb on - strand, within EX28DRAFT_3074 at 384.961 kb on - strand, within EX28DRAFT_3074 at 384.973 kb on + strand, within EX28DRAFT_3074 at 384.973 kb on + strand, within EX28DRAFT_3074 at 385.111 kb on + strand, within EX28DRAFT_3074 at 385.112 kb on - strand, within EX28DRAFT_3074 at 385.205 kb on - strand, within EX28DRAFT_3074 at 385.206 kb on + strand, within EX28DRAFT_3074 at 385.207 kb on - strand, within EX28DRAFT_3074 at 385.466 kb on + strand at 385.482 kb on + strand at 385.515 kb on + strand at 385.515 kb on + strand at 385.515 kb on + strand at 385.516 kb on - strand at 385.516 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 382,330 + EX28DRAFT_3072 0.16 +0.3 382,331 - EX28DRAFT_3072 0.16 -0.4 382,331 - EX28DRAFT_3072 0.16 -0.2 382,431 - EX28DRAFT_3072 0.32 -0.2 382,575 + EX28DRAFT_3072 0.55 -0.0 382,671 + EX28DRAFT_3072 0.70 -1.5 382,812 + +0.4 382,813 - +0.0 382,924 + +0.8 382,925 - +0.1 382,930 + +0.7 382,930 + +0.4 382,930 + -0.5 382,930 + -0.3 382,930 + -0.2 382,931 - +0.0 382,932 + -0.0 382,933 - +0.2 382,936 + -0.2 382,986 + -0.8 383,021 + -0.6 383,025 + -0.6 383,040 - -0.5 383,180 - -1.7 383,184 - -1.4 383,274 - EX28DRAFT_3073 0.14 -1.0 383,277 + EX28DRAFT_3073 0.14 -0.8 383,361 - EX28DRAFT_3073 0.20 -2.0 383,539 + EX28DRAFT_3073 0.32 -0.6 383,910 + EX28DRAFT_3073 0.57 -1.4 384,039 + EX28DRAFT_3073 0.66 -1.7 384,221 + EX28DRAFT_3073 0.78 -1.7 384,221 + EX28DRAFT_3073 0.78 -2.1 384,222 - EX28DRAFT_3073 0.78 +0.2 384,258 + EX28DRAFT_3073 0.81 -2.1 384,259 - EX28DRAFT_3073 0.81 -1.3 384,444 + -2.3 384,447 - +0.0 384,525 - -0.4 384,537 - -0.2 384,540 + +0.6 384,639 + +0.1 384,639 + -0.2 384,705 + -1.0 384,750 + -2.0 384,829 - EX28DRAFT_3074 0.14 -0.4 384,829 - EX28DRAFT_3074 0.14 +0.1 384,829 - EX28DRAFT_3074 0.14 -0.5 384,961 - EX28DRAFT_3074 0.34 +0.0 384,961 - EX28DRAFT_3074 0.34 -1.9 384,973 + EX28DRAFT_3074 0.36 -0.8 384,973 + EX28DRAFT_3074 0.36 -0.2 385,111 + EX28DRAFT_3074 0.57 -0.1 385,112 - EX28DRAFT_3074 0.57 +0.3 385,205 - EX28DRAFT_3074 0.71 -1.5 385,206 + EX28DRAFT_3074 0.71 -0.3 385,207 - EX28DRAFT_3074 0.71 -0.9 385,466 + -0.1 385,482 + -0.4 385,515 + -0.4 385,515 + -0.4 385,515 + -0.1 385,516 - -0.5 385,516 - +2.2
Or see this region's nucleotide sequence