Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3055 and EX28DRAFT_3056 are separated by 118 nucleotides EX28DRAFT_3056 and EX28DRAFT_3057 are separated by 139 nucleotides EX28DRAFT_3057 and EX28DRAFT_3058 overlap by 4 nucleotides
EX28DRAFT_3055: EX28DRAFT_3055 - DNA topoisomerase IV, A subunit, proteobacterial, at 364,611 to 366,869
_3055
EX28DRAFT_3056: EX28DRAFT_3056 - TIGR00156 family protein, at 366,988 to 367,389
_3056
EX28DRAFT_3057: EX28DRAFT_3057 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 367,529 to 368,188
_3057
EX28DRAFT_3058: EX28DRAFT_3058 - Signal transduction histidine kinase, at 368,185 to 369,534
_3058
Position (kb) 366
367
368 Strain fitness (log2 ratio) -1
0
1
2 at 366.926 kb on - strand at 366.926 kb on - strand at 366.926 kb on - strand at 366.929 kb on - strand at 366.989 kb on + strand at 367.002 kb on + strand at 367.002 kb on + strand at 367.003 kb on - strand at 367.005 kb on + strand at 367.005 kb on + strand at 367.072 kb on - strand, within EX28DRAFT_3056 at 367.124 kb on - strand, within EX28DRAFT_3056 at 367.427 kb on + strand at 367.427 kb on + strand at 367.427 kb on + strand at 367.443 kb on - strand at 367.470 kb on + strand at 367.471 kb on - strand at 367.481 kb on + strand at 367.506 kb on - strand at 367.546 kb on - strand at 367.662 kb on - strand, within EX28DRAFT_3057 at 367.820 kb on + strand, within EX28DRAFT_3057 at 367.821 kb on - strand, within EX28DRAFT_3057 at 367.821 kb on - strand, within EX28DRAFT_3057 at 367.821 kb on - strand, within EX28DRAFT_3057 at 367.828 kb on + strand, within EX28DRAFT_3057 at 367.845 kb on + strand, within EX28DRAFT_3057 at 367.845 kb on + strand, within EX28DRAFT_3057 at 368.063 kb on + strand, within EX28DRAFT_3057 at 368.063 kb on + strand, within EX28DRAFT_3057 at 368.064 kb on - strand, within EX28DRAFT_3057 at 368.064 kb on - strand, within EX28DRAFT_3057 at 368.065 kb on + strand, within EX28DRAFT_3057
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 366,926 - +1.8 366,926 - +1.7 366,926 - -0.3 366,929 - -0.3 366,989 + -0.0 367,002 + -0.2 367,002 + -1.1 367,003 - -0.1 367,005 + -0.9 367,005 + +0.2 367,072 - EX28DRAFT_3056 0.21 -0.2 367,124 - EX28DRAFT_3056 0.34 -1.4 367,427 + +0.0 367,427 + -0.2 367,427 + +0.1 367,443 - -0.7 367,470 + +0.0 367,471 - +1.2 367,481 + +0.9 367,506 - +0.7 367,546 - -0.9 367,662 - EX28DRAFT_3057 0.20 -0.4 367,820 + EX28DRAFT_3057 0.44 +0.1 367,821 - EX28DRAFT_3057 0.44 -0.7 367,821 - EX28DRAFT_3057 0.44 -0.3 367,821 - EX28DRAFT_3057 0.44 +0.5 367,828 + EX28DRAFT_3057 0.45 +0.1 367,845 + EX28DRAFT_3057 0.48 +0.4 367,845 + EX28DRAFT_3057 0.48 +0.2 368,063 + EX28DRAFT_3057 0.81 -0.1 368,063 + EX28DRAFT_3057 0.81 +1.2 368,064 - EX28DRAFT_3057 0.81 -0.4 368,064 - EX28DRAFT_3057 0.81 -0.0 368,065 + EX28DRAFT_3057 0.81 +0.1
Or see this region's nucleotide sequence