Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3042 and EX28DRAFT_3043 are separated by 1 nucleotides EX28DRAFT_3043 and EX28DRAFT_3044 are separated by 42 nucleotides EX28DRAFT_3044 and EX28DRAFT_3045 are separated by 4 nucleotides EX28DRAFT_3045 and EX28DRAFT_3046 are separated by 251 nucleotides
EX28DRAFT_3042: EX28DRAFT_3042 - hypothetical protein, at 350,747 to 351,151
_3042
EX28DRAFT_3043: EX28DRAFT_3043 - hypothetical protein, at 351,153 to 351,602
_3043
EX28DRAFT_3044: EX28DRAFT_3044 - TonB system transport protein ExbD, group 1, at 351,645 to 352,070
_3044
EX28DRAFT_3045: EX28DRAFT_3045 - tonB-system energizer ExbB, at 352,075 to 352,806
_3045
EX28DRAFT_3046: EX28DRAFT_3046 - cystathionine beta-lyase, bacterial, at 353,058 to 354,245
_3046
Position (kb) 352
353 Strain fitness (log2 ratio) -1
0
1
2
3 at 351.215 kb on + strand, within EX28DRAFT_3043 at 351.216 kb on - strand, within EX28DRAFT_3043 at 351.273 kb on - strand, within EX28DRAFT_3043 at 351.273 kb on - strand, within EX28DRAFT_3043 at 351.275 kb on + strand, within EX28DRAFT_3043 at 351.275 kb on + strand, within EX28DRAFT_3043 at 351.276 kb on - strand, within EX28DRAFT_3043 at 351.369 kb on + strand, within EX28DRAFT_3043 at 351.395 kb on - strand, within EX28DRAFT_3043 at 351.395 kb on - strand, within EX28DRAFT_3043 at 351.395 kb on - strand, within EX28DRAFT_3043 at 351.395 kb on - strand, within EX28DRAFT_3043 at 351.447 kb on + strand, within EX28DRAFT_3043 at 351.447 kb on + strand, within EX28DRAFT_3043 at 351.518 kb on + strand, within EX28DRAFT_3043 at 351.718 kb on - strand, within EX28DRAFT_3044 at 351.791 kb on + strand, within EX28DRAFT_3044 at 351.792 kb on - strand, within EX28DRAFT_3044 at 351.877 kb on + strand, within EX28DRAFT_3044 at 351.878 kb on - strand, within EX28DRAFT_3044 at 351.882 kb on - strand, within EX28DRAFT_3044 at 351.882 kb on - strand, within EX28DRAFT_3044 at 352.071 kb on - strand at 352.071 kb on - strand at 352.093 kb on - strand at 352.223 kb on + strand, within EX28DRAFT_3045 at 352.223 kb on + strand, within EX28DRAFT_3045 at 352.223 kb on + strand, within EX28DRAFT_3045 at 352.223 kb on + strand, within EX28DRAFT_3045 at 352.224 kb on - strand, within EX28DRAFT_3045 at 352.642 kb on - strand, within EX28DRAFT_3045 at 352.760 kb on + strand at 352.760 kb on + strand at 352.761 kb on - strand at 352.761 kb on - strand at 352.844 kb on + strand at 352.844 kb on + strand at 352.845 kb on - strand at 352.845 kb on - strand at 352.845 kb on - strand at 352.847 kb on + strand at 352.847 kb on + strand at 352.848 kb on - strand at 352.885 kb on + strand at 352.889 kb on - strand at 352.977 kb on + strand at 353.037 kb on - strand at 353.366 kb on + strand, within EX28DRAFT_3046 at 353.431 kb on + strand, within EX28DRAFT_3046 at 353.486 kb on + strand, within EX28DRAFT_3046 at 353.663 kb on + strand, within EX28DRAFT_3046 at 353.663 kb on + strand, within EX28DRAFT_3046 at 353.688 kb on + strand, within EX28DRAFT_3046 at 353.805 kb on + strand, within EX28DRAFT_3046 at 353.805 kb on + strand, within EX28DRAFT_3046 at 353.806 kb on - strand, within EX28DRAFT_3046 at 353.806 kb on - strand, within EX28DRAFT_3046
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 351,215 + EX28DRAFT_3043 0.14 +0.2 351,216 - EX28DRAFT_3043 0.14 -0.1 351,273 - EX28DRAFT_3043 0.27 -0.2 351,273 - EX28DRAFT_3043 0.27 -0.0 351,275 + EX28DRAFT_3043 0.27 +0.3 351,275 + EX28DRAFT_3043 0.27 -0.2 351,276 - EX28DRAFT_3043 0.27 -0.2 351,369 + EX28DRAFT_3043 0.48 -0.6 351,395 - EX28DRAFT_3043 0.54 -0.1 351,395 - EX28DRAFT_3043 0.54 -0.4 351,395 - EX28DRAFT_3043 0.54 +0.7 351,395 - EX28DRAFT_3043 0.54 -0.1 351,447 + EX28DRAFT_3043 0.65 +0.8 351,447 + EX28DRAFT_3043 0.65 -0.3 351,518 + EX28DRAFT_3043 0.81 -0.0 351,718 - EX28DRAFT_3044 0.17 +0.2 351,791 + EX28DRAFT_3044 0.34 +1.4 351,792 - EX28DRAFT_3044 0.35 -0.6 351,877 + EX28DRAFT_3044 0.54 +0.8 351,878 - EX28DRAFT_3044 0.55 +0.2 351,882 - EX28DRAFT_3044 0.56 -0.4 351,882 - EX28DRAFT_3044 0.56 +1.4 352,071 - +0.9 352,071 - -1.2 352,093 - +0.1 352,223 + EX28DRAFT_3045 0.20 -1.5 352,223 + EX28DRAFT_3045 0.20 -1.2 352,223 + EX28DRAFT_3045 0.20 -1.0 352,223 + EX28DRAFT_3045 0.20 -0.7 352,224 - EX28DRAFT_3045 0.20 -0.5 352,642 - EX28DRAFT_3045 0.77 -0.2 352,760 + +0.3 352,760 + -0.2 352,761 - +0.1 352,761 - +0.5 352,844 + -0.1 352,844 + +0.6 352,845 - -0.3 352,845 - +1.7 352,845 - -0.1 352,847 + +0.3 352,847 + +0.4 352,848 - +0.7 352,885 + -0.6 352,889 - +0.0 352,977 + -0.1 353,037 - +1.4 353,366 + EX28DRAFT_3046 0.26 -0.0 353,431 + EX28DRAFT_3046 0.31 +3.3 353,486 + EX28DRAFT_3046 0.36 -0.3 353,663 + EX28DRAFT_3046 0.51 +0.8 353,663 + EX28DRAFT_3046 0.51 +0.9 353,688 + EX28DRAFT_3046 0.53 +0.4 353,805 + EX28DRAFT_3046 0.63 +1.2 353,805 + EX28DRAFT_3046 0.63 +0.1 353,806 - EX28DRAFT_3046 0.63 +0.2 353,806 - EX28DRAFT_3046 0.63 -0.5
Or see this region's nucleotide sequence