Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2995 and EX28DRAFT_2996 are separated by 56 nucleotides EX28DRAFT_2996 and EX28DRAFT_2997 overlap by 1 nucleotides EX28DRAFT_2997 and EX28DRAFT_2998 are separated by 138 nucleotides
EX28DRAFT_2995: EX28DRAFT_2995 - Protein of unknown function (DUF2884), at 304,611 to 305,327
_2995
EX28DRAFT_2996: EX28DRAFT_2996 - Uncharacterized protein conserved in bacteria, at 305,384 to 305,710
_2996
EX28DRAFT_2997: EX28DRAFT_2997 - tRNA (guanine-N(7)-)-methyltransferase, at 305,710 to 306,429
_2997
EX28DRAFT_2998: EX28DRAFT_2998 - A/G-specific DNA-adenine glycosylase (EC 3.2.2.-), at 306,568 to 307,626
_2998
Position (kb) 305
306
307 Strain fitness (log2 ratio) -2
-1
0
1
2 at 304.894 kb on + strand, within EX28DRAFT_2995 at 304.895 kb on - strand, within EX28DRAFT_2995 at 305.229 kb on + strand, within EX28DRAFT_2995 at 305.331 kb on - strand at 305.331 kb on - strand at 305.360 kb on + strand at 305.360 kb on + strand at 305.383 kb on - strand at 305.383 kb on - strand at 305.385 kb on + strand at 305.386 kb on - strand at 305.386 kb on - strand at 305.452 kb on + strand, within EX28DRAFT_2996 at 305.452 kb on + strand, within EX28DRAFT_2996 at 305.606 kb on + strand, within EX28DRAFT_2996 at 305.606 kb on + strand, within EX28DRAFT_2996 at 305.607 kb on - strand, within EX28DRAFT_2996 at 305.712 kb on - strand at 305.731 kb on + strand at 305.731 kb on + strand at 305.810 kb on + strand, within EX28DRAFT_2997 at 305.811 kb on - strand, within EX28DRAFT_2997 at 305.811 kb on - strand, within EX28DRAFT_2997 at 305.811 kb on - strand, within EX28DRAFT_2997 at 305.868 kb on + strand, within EX28DRAFT_2997 at 305.868 kb on + strand, within EX28DRAFT_2997 at 305.868 kb on + strand, within EX28DRAFT_2997 at 305.868 kb on + strand, within EX28DRAFT_2997 at 305.869 kb on - strand, within EX28DRAFT_2997 at 305.869 kb on - strand, within EX28DRAFT_2997 at 305.879 kb on + strand, within EX28DRAFT_2997 at 305.902 kb on - strand, within EX28DRAFT_2997 at 305.929 kb on - strand, within EX28DRAFT_2997 at 305.973 kb on + strand, within EX28DRAFT_2997 at 305.977 kb on - strand, within EX28DRAFT_2997 at 305.977 kb on - strand, within EX28DRAFT_2997 at 306.048 kb on + strand, within EX28DRAFT_2997 at 306.492 kb on - strand at 306.492 kb on - strand at 306.492 kb on - strand at 306.517 kb on + strand at 306.557 kb on + strand at 306.622 kb on + strand at 306.622 kb on + strand at 306.623 kb on - strand at 306.630 kb on + strand at 306.671 kb on + strand at 306.671 kb on + strand at 306.672 kb on - strand at 307.074 kb on - strand, within EX28DRAFT_2998 at 307.074 kb on - strand, within EX28DRAFT_2998 at 307.074 kb on - strand, within EX28DRAFT_2998 at 307.275 kb on + strand, within EX28DRAFT_2998 at 307.275 kb on + strand, within EX28DRAFT_2998 at 307.275 kb on + strand, within EX28DRAFT_2998 at 307.276 kb on - strand, within EX28DRAFT_2998 at 307.276 kb on - strand, within EX28DRAFT_2998 at 307.276 kb on - strand, within EX28DRAFT_2998 at 307.276 kb on - strand, within EX28DRAFT_2998 at 307.276 kb on - strand, within EX28DRAFT_2998 at 307.346 kb on + strand, within EX28DRAFT_2998 at 307.346 kb on + strand, within EX28DRAFT_2998 at 307.346 kb on + strand, within EX28DRAFT_2998 at 307.347 kb on - strand, within EX28DRAFT_2998 at 307.347 kb on - strand, within EX28DRAFT_2998 at 307.348 kb on + strand, within EX28DRAFT_2998
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 304,894 + EX28DRAFT_2995 0.39 +0.6 304,895 - EX28DRAFT_2995 0.40 +0.4 305,229 + EX28DRAFT_2995 0.86 +0.4 305,331 - -1.2 305,331 - -0.1 305,360 + +0.7 305,360 + +0.5 305,383 - +0.4 305,383 - +0.0 305,385 + -0.5 305,386 - -0.5 305,386 - +0.2 305,452 + EX28DRAFT_2996 0.21 -0.3 305,452 + EX28DRAFT_2996 0.21 +1.4 305,606 + EX28DRAFT_2996 0.68 -0.3 305,606 + EX28DRAFT_2996 0.68 -1.2 305,607 - EX28DRAFT_2996 0.68 +0.3 305,712 - +0.0 305,731 + -0.5 305,731 + -1.6 305,810 + EX28DRAFT_2997 0.14 -0.6 305,811 - EX28DRAFT_2997 0.14 -1.2 305,811 - EX28DRAFT_2997 0.14 -0.7 305,811 - EX28DRAFT_2997 0.14 -1.0 305,868 + EX28DRAFT_2997 0.22 +0.5 305,868 + EX28DRAFT_2997 0.22 -2.0 305,868 + EX28DRAFT_2997 0.22 -0.6 305,868 + EX28DRAFT_2997 0.22 -2.1 305,869 - EX28DRAFT_2997 0.22 -1.6 305,869 - EX28DRAFT_2997 0.22 -0.5 305,879 + EX28DRAFT_2997 0.23 -1.1 305,902 - EX28DRAFT_2997 0.27 -1.0 305,929 - EX28DRAFT_2997 0.30 -0.4 305,973 + EX28DRAFT_2997 0.37 -0.9 305,977 - EX28DRAFT_2997 0.37 -1.0 305,977 - EX28DRAFT_2997 0.37 -0.7 306,048 + EX28DRAFT_2997 0.47 -0.7 306,492 - -0.2 306,492 - +0.4 306,492 - +0.3 306,517 + +0.3 306,557 + +0.7 306,622 + +0.1 306,622 + +0.2 306,623 - +0.6 306,630 + -0.0 306,671 + -0.4 306,671 + +0.2 306,672 - +1.9 307,074 - EX28DRAFT_2998 0.48 +0.1 307,074 - EX28DRAFT_2998 0.48 -0.8 307,074 - EX28DRAFT_2998 0.48 -0.2 307,275 + EX28DRAFT_2998 0.67 +0.0 307,275 + EX28DRAFT_2998 0.67 +0.0 307,275 + EX28DRAFT_2998 0.67 -0.5 307,276 - EX28DRAFT_2998 0.67 -0.2 307,276 - EX28DRAFT_2998 0.67 +0.3 307,276 - EX28DRAFT_2998 0.67 +0.0 307,276 - EX28DRAFT_2998 0.67 -0.1 307,276 - EX28DRAFT_2998 0.67 -0.9 307,346 + EX28DRAFT_2998 0.73 -0.2 307,346 + EX28DRAFT_2998 0.73 -2.2 307,346 + EX28DRAFT_2998 0.73 -0.2 307,347 - EX28DRAFT_2998 0.74 -0.5 307,347 - EX28DRAFT_2998 0.74 +0.1 307,348 + EX28DRAFT_2998 0.74 +0.3
Or see this region's nucleotide sequence