Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2984

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2982 and EX28DRAFT_2983 are separated by 94 nucleotidesEX28DRAFT_2983 and EX28DRAFT_2984 are separated by 51 nucleotidesEX28DRAFT_2984 and EX28DRAFT_2985 are separated by 19 nucleotides EX28DRAFT_2982: EX28DRAFT_2982 - Uncharacterized protein conserved in bacteria, at 295,690 to 296,187 _2982 EX28DRAFT_2983: EX28DRAFT_2983 - Endonuclease I, at 296,282 to 296,989 _2983 EX28DRAFT_2984: EX28DRAFT_2984 - RNA methyltransferase, RsmE family, at 297,041 to 297,772 _2984 EX28DRAFT_2985: EX28DRAFT_2985 - glutathione synthase (EC 6.3.2.3), at 297,792 to 298,739 _2985 Position (kb) 297 298Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 296.065 kb on - strand, within EX28DRAFT_2982at 296.065 kb on - strand, within EX28DRAFT_2982at 296.279 kb on - strandat 296.483 kb on + strand, within EX28DRAFT_2983at 296.485 kb on + strand, within EX28DRAFT_2983at 296.485 kb on + strand, within EX28DRAFT_2983at 296.485 kb on + strand, within EX28DRAFT_2983at 296.486 kb on - strand, within EX28DRAFT_2983at 296.693 kb on + strand, within EX28DRAFT_2983at 296.693 kb on + strand, within EX28DRAFT_2983at 296.807 kb on + strand, within EX28DRAFT_2983at 296.807 kb on + strand, within EX28DRAFT_2983at 296.808 kb on - strand, within EX28DRAFT_2983at 296.808 kb on - strand, within EX28DRAFT_2983at 296.813 kb on + strand, within EX28DRAFT_2983at 296.813 kb on + strand, within EX28DRAFT_2983at 296.813 kb on + strand, within EX28DRAFT_2983at 296.813 kb on + strand, within EX28DRAFT_2983at 296.814 kb on - strand, within EX28DRAFT_2983at 296.814 kb on - strand, within EX28DRAFT_2983at 296.814 kb on - strand, within EX28DRAFT_2983at 296.954 kb on + strandat 296.992 kb on + strandat 296.992 kb on + strandat 296.992 kb on + strandat 296.993 kb on - strandat 296.993 kb on - strandat 297.011 kb on + strandat 297.011 kb on + strandat 297.011 kb on + strandat 297.041 kb on - strandat 297.059 kb on + strandat 297.059 kb on + strandat 297.077 kb on - strandat 297.159 kb on + strand, within EX28DRAFT_2984at 297.159 kb on + strand, within EX28DRAFT_2984at 297.225 kb on + strand, within EX28DRAFT_2984at 297.351 kb on + strand, within EX28DRAFT_2984at 297.351 kb on + strand, within EX28DRAFT_2984at 297.351 kb on + strand, within EX28DRAFT_2984at 297.351 kb on + strand, within EX28DRAFT_2984at 297.351 kb on + strand, within EX28DRAFT_2984at 297.352 kb on - strand, within EX28DRAFT_2984at 297.352 kb on - strand, within EX28DRAFT_2984at 297.352 kb on - strand, within EX28DRAFT_2984at 297.445 kb on + strand, within EX28DRAFT_2984at 297.580 kb on + strand, within EX28DRAFT_2984at 297.901 kb on - strand, within EX28DRAFT_2985at 297.903 kb on - strand, within EX28DRAFT_2985at 298.074 kb on + strand, within EX28DRAFT_2985at 298.074 kb on + strand, within EX28DRAFT_2985at 298.075 kb on - strand, within EX28DRAFT_2985at 298.075 kb on - strand, within EX28DRAFT_2985at 298.075 kb on - strand, within EX28DRAFT_2985at 298.075 kb on - strand, within EX28DRAFT_2985at 298.080 kb on + strand, within EX28DRAFT_2985at 298.081 kb on - strand, within EX28DRAFT_2985at 298.081 kb on - strand, within EX28DRAFT_2985at 298.089 kb on + strand, within EX28DRAFT_2985at 298.170 kb on + strand, within EX28DRAFT_2985at 298.390 kb on - strand, within EX28DRAFT_2985at 298.466 kb on + strand, within EX28DRAFT_2985at 298.467 kb on - strand, within EX28DRAFT_2985at 298.738 kb on - strandat 298.743 kb on - strandat 298.743 kb on - strandat 298.743 kb on - strandat 298.748 kb on + strandat 298.748 kb on + strandat 298.748 kb on + strandat 298.748 kb on + strandat 298.749 kb on - strandat 298.749 kb on - strandat 298.749 kb on - strandat 298.749 kb on - strandat 298.751 kb on + strandat 298.752 kb on - strandat 298.752 kb on - strandat 298.752 kb on - strandat 298.754 kb on + strandat 298.755 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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296,065 - EX28DRAFT_2982 0.75 -0.3
296,065 - EX28DRAFT_2982 0.75 +0.1
296,279 - +0.5
296,483 + EX28DRAFT_2983 0.28 -0.1
296,485 + EX28DRAFT_2983 0.29 -0.0
296,485 + EX28DRAFT_2983 0.29 +1.0
296,485 + EX28DRAFT_2983 0.29 +0.2
296,486 - EX28DRAFT_2983 0.29 +0.4
296,693 + EX28DRAFT_2983 0.58 +0.2
296,693 + EX28DRAFT_2983 0.58 -0.7
296,807 + EX28DRAFT_2983 0.74 -1.8
296,807 + EX28DRAFT_2983 0.74 +0.0
296,808 - EX28DRAFT_2983 0.74 +0.3
296,808 - EX28DRAFT_2983 0.74 +0.1
296,813 + EX28DRAFT_2983 0.75 -0.2
296,813 + EX28DRAFT_2983 0.75 +0.3
296,813 + EX28DRAFT_2983 0.75 +0.7
296,813 + EX28DRAFT_2983 0.75 -0.4
296,814 - EX28DRAFT_2983 0.75 -0.1
296,814 - EX28DRAFT_2983 0.75 -0.2
296,814 - EX28DRAFT_2983 0.75 -0.2
296,954 + +0.3
296,992 + -0.8
296,992 + +0.1
296,992 + +0.2
296,993 - -0.2
296,993 - -0.4
297,011 + -0.5
297,011 + -0.0
297,011 + +0.2
297,041 - +0.0
297,059 + -0.2
297,059 + +0.7
297,077 - +0.3
297,159 + EX28DRAFT_2984 0.16 -0.3
297,159 + EX28DRAFT_2984 0.16 +0.3
297,225 + EX28DRAFT_2984 0.25 -0.0
297,351 + EX28DRAFT_2984 0.42 +1.1
297,351 + EX28DRAFT_2984 0.42 +0.3
297,351 + EX28DRAFT_2984 0.42 +0.4
297,351 + EX28DRAFT_2984 0.42 -0.2
297,351 + EX28DRAFT_2984 0.42 +0.9
297,352 - EX28DRAFT_2984 0.42 -0.8
297,352 - EX28DRAFT_2984 0.42 +0.2
297,352 - EX28DRAFT_2984 0.42 +0.8
297,445 + EX28DRAFT_2984 0.55 +0.4
297,580 + EX28DRAFT_2984 0.74 -0.1
297,901 - EX28DRAFT_2985 0.11 -2.5
297,903 - EX28DRAFT_2985 0.12 -2.3
298,074 + EX28DRAFT_2985 0.30 -3.8
298,074 + EX28DRAFT_2985 0.30 -2.8
298,075 - EX28DRAFT_2985 0.30 -2.6
298,075 - EX28DRAFT_2985 0.30 -5.4
298,075 - EX28DRAFT_2985 0.30 -3.5
298,075 - EX28DRAFT_2985 0.30 -2.6
298,080 + EX28DRAFT_2985 0.30 -3.3
298,081 - EX28DRAFT_2985 0.30 -1.9
298,081 - EX28DRAFT_2985 0.30 -1.9
298,089 + EX28DRAFT_2985 0.31 -2.5
298,170 + EX28DRAFT_2985 0.40 -2.2
298,390 - EX28DRAFT_2985 0.63 -0.6
298,466 + EX28DRAFT_2985 0.71 -2.4
298,467 - EX28DRAFT_2985 0.71 -2.0
298,738 - -0.4
298,743 - -0.2
298,743 - +0.8
298,743 - +0.0
298,748 + -0.0
298,748 + -2.5
298,748 + -0.4
298,748 + +0.2
298,749 - +0.1
298,749 - -0.3
298,749 - -0.3
298,749 - +0.1
298,751 + +0.4
298,752 - -1.0
298,752 - -0.3
298,752 - -0.4
298,754 + -0.8
298,755 - -0.3

Or see this region's nucleotide sequence