Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2877

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2876 and EX28DRAFT_2877 are separated by 116 nucleotidesEX28DRAFT_2877 and EX28DRAFT_2878 are separated by 515 nucleotides EX28DRAFT_2876: EX28DRAFT_2876 - 7-cyano-7-deazaguanine reductase, at 181,712 to 182,554 _2876 EX28DRAFT_2877: EX28DRAFT_2877 - Predicted Rossmann fold nucleotide-binding protein, at 182,671 to 184,035 _2877 EX28DRAFT_2878: EX28DRAFT_2878 - serine transporter, at 184,551 to 185,846 _2878 Position (kb) 182 183 184 185Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 181.683 kb on + strandat 181.683 kb on + strandat 181.684 kb on - strandat 181.689 kb on + strandat 181.689 kb on + strandat 181.689 kb on + strandat 181.690 kb on - strandat 181.705 kb on - strandat 181.887 kb on - strand, within EX28DRAFT_2876at 181.887 kb on - strand, within EX28DRAFT_2876at 181.887 kb on - strand, within EX28DRAFT_2876at 181.952 kb on + strand, within EX28DRAFT_2876at 181.953 kb on - strand, within EX28DRAFT_2876at 181.987 kb on + strand, within EX28DRAFT_2876at 181.988 kb on - strand, within EX28DRAFT_2876at 182.065 kb on - strand, within EX28DRAFT_2876at 182.187 kb on - strand, within EX28DRAFT_2876at 182.411 kb on - strand, within EX28DRAFT_2876at 182.469 kb on - strand, within EX28DRAFT_2876at 182.555 kb on + strandat 182.558 kb on - strandat 182.561 kb on + strandat 182.562 kb on - strandat 182.573 kb on - strandat 182.629 kb on - strandat 182.629 kb on - strandat 182.629 kb on - strandat 182.677 kb on - strandat 182.682 kb on + strandat 182.682 kb on + strandat 182.682 kb on + strandat 182.683 kb on - strandat 182.683 kb on - strandat 182.685 kb on + strandat 182.686 kb on - strandat 182.706 kb on + strandat 182.707 kb on - strandat 182.707 kb on - strandat 182.707 kb on - strandat 182.736 kb on + strandat 182.793 kb on - strandat 182.818 kb on - strand, within EX28DRAFT_2877at 182.818 kb on - strand, within EX28DRAFT_2877at 182.823 kb on + strand, within EX28DRAFT_2877at 183.052 kb on - strand, within EX28DRAFT_2877at 183.160 kb on + strand, within EX28DRAFT_2877at 183.161 kb on - strand, within EX28DRAFT_2877at 183.161 kb on - strand, within EX28DRAFT_2877at 183.161 kb on - strand, within EX28DRAFT_2877at 183.210 kb on + strand, within EX28DRAFT_2877at 183.210 kb on + strand, within EX28DRAFT_2877at 183.210 kb on + strand, within EX28DRAFT_2877at 183.210 kb on + strand, within EX28DRAFT_2877at 183.211 kb on - strand, within EX28DRAFT_2877at 183.287 kb on - strand, within EX28DRAFT_2877at 183.369 kb on + strand, within EX28DRAFT_2877at 183.370 kb on - strand, within EX28DRAFT_2877at 183.426 kb on + strand, within EX28DRAFT_2877at 183.469 kb on + strand, within EX28DRAFT_2877at 183.470 kb on - strand, within EX28DRAFT_2877at 183.470 kb on - strand, within EX28DRAFT_2877at 183.480 kb on + strand, within EX28DRAFT_2877at 183.480 kb on + strand, within EX28DRAFT_2877at 183.553 kb on + strand, within EX28DRAFT_2877at 183.576 kb on + strand, within EX28DRAFT_2877at 183.709 kb on + strand, within EX28DRAFT_2877at 183.710 kb on - strand, within EX28DRAFT_2877at 183.717 kb on + strand, within EX28DRAFT_2877at 183.717 kb on + strand, within EX28DRAFT_2877at 183.718 kb on - strand, within EX28DRAFT_2877at 183.910 kb on + strandat 183.911 kb on - strandat 184.006 kb on + strandat 184.006 kb on + strandat 184.007 kb on - strandat 184.007 kb on - strandat 184.034 kb on - strandat 184.120 kb on + strandat 184.120 kb on + strandat 184.121 kb on - strandat 184.121 kb on - strandat 184.248 kb on + strandat 184.248 kb on + strandat 184.249 kb on - strandat 184.249 kb on - strandat 184.333 kb on + strandat 184.408 kb on - strandat 184.408 kb on - strandat 184.547 kb on - strandat 184.664 kb on - strandat 184.664 kb on - strandat 184.715 kb on + strand, within EX28DRAFT_2878at 184.716 kb on - strand, within EX28DRAFT_2878at 184.722 kb on - strand, within EX28DRAFT_2878at 184.864 kb on - strand, within EX28DRAFT_2878at 184.878 kb on + strand, within EX28DRAFT_2878at 184.897 kb on - strand, within EX28DRAFT_2878at 184.897 kb on - strand, within EX28DRAFT_2878at 185.006 kb on + strand, within EX28DRAFT_2878

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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181,683 + -0.9
181,683 + -0.7
181,684 - +0.1
181,689 + +0.3
181,689 + +0.9
181,689 + -2.9
181,690 - -0.5
181,705 - +0.3
181,887 - EX28DRAFT_2876 0.21 -0.3
181,887 - EX28DRAFT_2876 0.21 +0.4
181,887 - EX28DRAFT_2876 0.21 -0.1
181,952 + EX28DRAFT_2876 0.28 +0.4
181,953 - EX28DRAFT_2876 0.29 -0.8
181,987 + EX28DRAFT_2876 0.33 -0.4
181,988 - EX28DRAFT_2876 0.33 -0.6
182,065 - EX28DRAFT_2876 0.42 -0.1
182,187 - EX28DRAFT_2876 0.56 -1.9
182,411 - EX28DRAFT_2876 0.83 +1.3
182,469 - EX28DRAFT_2876 0.90 -0.0
182,555 + +0.1
182,558 - -0.3
182,561 + +0.0
182,562 - -0.1
182,573 - -0.2
182,629 - -0.9
182,629 - -0.5
182,629 - -0.4
182,677 - +2.2
182,682 + -0.9
182,682 + -1.2
182,682 + -1.1
182,683 - -1.0
182,683 - +0.2
182,685 + +0.2
182,686 - -0.9
182,706 + -1.8
182,707 - -1.1
182,707 - -1.9
182,707 - +1.3
182,736 + -1.1
182,793 - -0.4
182,818 - EX28DRAFT_2877 0.11 -1.4
182,818 - EX28DRAFT_2877 0.11 -1.3
182,823 + EX28DRAFT_2877 0.11 -0.7
183,052 - EX28DRAFT_2877 0.28 -0.8
183,160 + EX28DRAFT_2877 0.36 -0.6
183,161 - EX28DRAFT_2877 0.36 -0.6
183,161 - EX28DRAFT_2877 0.36 -2.3
183,161 - EX28DRAFT_2877 0.36 -0.7
183,210 + EX28DRAFT_2877 0.39 -0.4
183,210 + EX28DRAFT_2877 0.39 -0.4
183,210 + EX28DRAFT_2877 0.39 -0.5
183,210 + EX28DRAFT_2877 0.39 -0.5
183,211 - EX28DRAFT_2877 0.40 -1.0
183,287 - EX28DRAFT_2877 0.45 -0.5
183,369 + EX28DRAFT_2877 0.51 -1.6
183,370 - EX28DRAFT_2877 0.51 -1.5
183,426 + EX28DRAFT_2877 0.55 -1.5
183,469 + EX28DRAFT_2877 0.58 -0.4
183,470 - EX28DRAFT_2877 0.59 -1.0
183,470 - EX28DRAFT_2877 0.59 -0.4
183,480 + EX28DRAFT_2877 0.59 -0.4
183,480 + EX28DRAFT_2877 0.59 -0.2
183,553 + EX28DRAFT_2877 0.65 -0.4
183,576 + EX28DRAFT_2877 0.66 -0.5
183,709 + EX28DRAFT_2877 0.76 -0.8
183,710 - EX28DRAFT_2877 0.76 -0.6
183,717 + EX28DRAFT_2877 0.77 -0.6
183,717 + EX28DRAFT_2877 0.77 -0.8
183,718 - EX28DRAFT_2877 0.77 -1.5
183,910 + -1.0
183,911 - -0.1
184,006 + +0.0
184,006 + -1.2
184,007 - -1.3
184,007 - -0.1
184,034 - -0.0
184,120 + -0.5
184,120 + -0.4
184,121 - -0.2
184,121 - +0.1
184,248 + +0.0
184,248 + +0.4
184,249 - +0.4
184,249 - -0.2
184,333 + +0.9
184,408 - +0.3
184,408 - +0.4
184,547 - +0.5
184,664 - +0.5
184,664 - -0.2
184,715 + EX28DRAFT_2878 0.13 -0.4
184,716 - EX28DRAFT_2878 0.13 -3.4
184,722 - EX28DRAFT_2878 0.13 +0.4
184,864 - EX28DRAFT_2878 0.24 +0.2
184,878 + EX28DRAFT_2878 0.25 +0.4
184,897 - EX28DRAFT_2878 0.27 +0.2
184,897 - EX28DRAFT_2878 0.27 +0.7
185,006 + EX28DRAFT_2878 0.35 +0.3

Or see this region's nucleotide sequence