Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2863

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2862 and EX28DRAFT_2863 are separated by 223 nucleotidesEX28DRAFT_2863 and EX28DRAFT_2864 are separated by 67 nucleotides EX28DRAFT_2862: EX28DRAFT_2862 - CTP synthase (EC 6.3.4.2), at 164,115 to 165,752 _2862 EX28DRAFT_2863: EX28DRAFT_2863 - MazG family protein, at 165,976 to 166,767 _2863 EX28DRAFT_2864: EX28DRAFT_2864 - (p)ppGpp synthetase, RelA/SpoT family, at 166,835 to 169,066 _2864 Position (kb) 165 166 167Strain fitness (log2 ratio) -2 -1 0 1at 165.874 kb on - strandat 165.902 kb on + strandat 166.330 kb on - strand, within EX28DRAFT_2863at 166.365 kb on + strand, within EX28DRAFT_2863at 166.530 kb on + strand, within EX28DRAFT_2863at 166.562 kb on + strand, within EX28DRAFT_2863at 166.563 kb on - strand, within EX28DRAFT_2863at 166.646 kb on + strand, within EX28DRAFT_2863at 166.663 kb on - strand, within EX28DRAFT_2863at 166.663 kb on - strand, within EX28DRAFT_2863at 166.920 kb on + strandat 166.936 kb on + strandat 166.937 kb on - strandat 166.937 kb on - strandat 167.111 kb on + strand, within EX28DRAFT_2864at 167.111 kb on + strand, within EX28DRAFT_2864at 167.111 kb on + strand, within EX28DRAFT_2864at 167.111 kb on + strand, within EX28DRAFT_2864at 167.197 kb on + strand, within EX28DRAFT_2864at 167.198 kb on - strand, within EX28DRAFT_2864at 167.317 kb on - strand, within EX28DRAFT_2864

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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165,874 - +0.3
165,902 + +0.1
166,330 - EX28DRAFT_2863 0.45 +0.3
166,365 + EX28DRAFT_2863 0.49 +0.6
166,530 + EX28DRAFT_2863 0.70 +0.1
166,562 + EX28DRAFT_2863 0.74 +0.3
166,563 - EX28DRAFT_2863 0.74 -0.4
166,646 + EX28DRAFT_2863 0.85 +1.0
166,663 - EX28DRAFT_2863 0.87 +0.2
166,663 - EX28DRAFT_2863 0.87 -0.4
166,920 + -2.3
166,936 + -1.0
166,937 - -1.8
166,937 - +0.2
167,111 + EX28DRAFT_2864 0.12 -2.0
167,111 + EX28DRAFT_2864 0.12 -2.6
167,111 + EX28DRAFT_2864 0.12 -1.8
167,111 + EX28DRAFT_2864 0.12 -1.3
167,197 + EX28DRAFT_2864 0.16 -2.5
167,198 - EX28DRAFT_2864 0.16 -1.5
167,317 - EX28DRAFT_2864 0.22 +0.5

Or see this region's nucleotide sequence