Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2807 and EX28DRAFT_2808 are separated by 86 nucleotides EX28DRAFT_2808 and EX28DRAFT_2809 overlap by 8 nucleotides EX28DRAFT_2809 and EX28DRAFT_2810 overlap by 4 nucleotides
EX28DRAFT_2807: EX28DRAFT_2807 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 111,312 to 112,736
_2807
EX28DRAFT_2808: EX28DRAFT_2808 - hydrogenase maturation protease HycI, at 112,823 to 113,278
_2808
EX28DRAFT_2809: EX28DRAFT_2809 - Formate hydrogenlyase maturation protein HycH, at 113,271 to 113,681
_2809
EX28DRAFT_2810: EX28DRAFT_2810 - Ni,Fe-hydrogenase III small subunit, at 113,678 to 114,445
_2810
Position (kb)
112
113
114 Strain fitness (log2 ratio)
-1
0
1 at 111.931 kb on - strand, within EX28DRAFT_2807 at 111.931 kb on - strand, within EX28DRAFT_2807 at 112.039 kb on - strand, within EX28DRAFT_2807 at 112.239 kb on + strand, within EX28DRAFT_2807 at 112.239 kb on + strand, within EX28DRAFT_2807 at 112.239 kb on + strand, within EX28DRAFT_2807 at 112.392 kb on + strand, within EX28DRAFT_2807 at 112.483 kb on - strand, within EX28DRAFT_2807 at 112.495 kb on - strand, within EX28DRAFT_2807 at 112.676 kb on + strand at 112.696 kb on - strand at 112.697 kb on + strand at 112.697 kb on + strand at 112.697 kb on + strand at 112.698 kb on - strand at 112.698 kb on - strand at 112.698 kb on - strand at 112.789 kb on + strand at 112.873 kb on - strand, within EX28DRAFT_2808 at 112.877 kb on + strand, within EX28DRAFT_2808 at 112.877 kb on + strand, within EX28DRAFT_2808 at 112.877 kb on + strand, within EX28DRAFT_2808 at 112.917 kb on + strand, within EX28DRAFT_2808 at 112.918 kb on - strand, within EX28DRAFT_2808 at 112.918 kb on - strand, within EX28DRAFT_2808 at 112.918 kb on - strand, within EX28DRAFT_2808 at 112.918 kb on - strand, within EX28DRAFT_2808 at 112.992 kb on + strand, within EX28DRAFT_2808 at 112.993 kb on - strand, within EX28DRAFT_2808 at 112.993 kb on - strand, within EX28DRAFT_2808 at 112.993 kb on - strand, within EX28DRAFT_2808 at 113.005 kb on + strand, within EX28DRAFT_2808 at 113.024 kb on - strand, within EX28DRAFT_2808 at 113.299 kb on + strand at 113.590 kb on + strand, within EX28DRAFT_2809 at 113.590 kb on + strand, within EX28DRAFT_2809 at 113.593 kb on + strand, within EX28DRAFT_2809 at 113.594 kb on - strand, within EX28DRAFT_2809 at 113.594 kb on - strand, within EX28DRAFT_2809 at 113.640 kb on - strand, within EX28DRAFT_2809 at 113.646 kb on - strand at 113.705 kb on - strand at 113.705 kb on - strand at 114.024 kb on + strand, within EX28DRAFT_2810
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 111,931 - EX28DRAFT_2807 0.43 -0.2 111,931 - EX28DRAFT_2807 0.43 -0.4 112,039 - EX28DRAFT_2807 0.51 +0.2 112,239 + EX28DRAFT_2807 0.65 +0.0 112,239 + EX28DRAFT_2807 0.65 +0.2 112,239 + EX28DRAFT_2807 0.65 +1.1 112,392 + EX28DRAFT_2807 0.76 -0.2 112,483 - EX28DRAFT_2807 0.82 -0.7 112,495 - EX28DRAFT_2807 0.83 +1.1 112,676 + +0.1 112,696 - +0.6 112,697 + +0.2 112,697 + -0.1 112,697 + +0.5 112,698 - -0.3 112,698 - +1.2 112,698 - +0.7 112,789 + +1.0 112,873 - EX28DRAFT_2808 0.11 -0.6 112,877 + EX28DRAFT_2808 0.12 +1.0 112,877 + EX28DRAFT_2808 0.12 +1.4 112,877 + EX28DRAFT_2808 0.12 -0.1 112,917 + EX28DRAFT_2808 0.21 -0.2 112,918 - EX28DRAFT_2808 0.21 +0.1 112,918 - EX28DRAFT_2808 0.21 +0.7 112,918 - EX28DRAFT_2808 0.21 -0.1 112,918 - EX28DRAFT_2808 0.21 -0.2 112,992 + EX28DRAFT_2808 0.37 +0.0 112,993 - EX28DRAFT_2808 0.37 +0.3 112,993 - EX28DRAFT_2808 0.37 +0.2 112,993 - EX28DRAFT_2808 0.37 -0.3 113,005 + EX28DRAFT_2808 0.40 +0.6 113,024 - EX28DRAFT_2808 0.44 +0.7 113,299 + +0.6 113,590 + EX28DRAFT_2809 0.78 +0.3 113,590 + EX28DRAFT_2809 0.78 +1.0 113,593 + EX28DRAFT_2809 0.78 -0.6 113,594 - EX28DRAFT_2809 0.79 +0.0 113,594 - EX28DRAFT_2809 0.79 +0.1 113,640 - EX28DRAFT_2809 0.90 +0.1 113,646 - -0.3 113,705 - +0.2 113,705 - -0.0 114,024 + EX28DRAFT_2810 0.45 +0.2
Or see this region's nucleotide sequence