Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2720

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2719 and EX28DRAFT_2720 are separated by 138 nucleotidesEX28DRAFT_2720 and EX28DRAFT_2721 are separated by 103 nucleotidesEX28DRAFT_2721 and EX28DRAFT_2722 overlap by 11 nucleotidesEX28DRAFT_2722 and EX28DRAFT_2723 are separated by 156 nucleotides EX28DRAFT_2719: EX28DRAFT_2719 - DNA repair protein RecN, at 23,359 to 25,020 _2719 EX28DRAFT_2720: EX28DRAFT_2720 - Small protein A (tmRNA-binding), at 25,159 to 25,497 _2720 EX28DRAFT_2721: EX28DRAFT_2721 - Uncharacterized protein conserved in bacteria, at 25,601 to 25,888 _2721 EX28DRAFT_2722: EX28DRAFT_2722 - Oligoketide cyclase/lipid transport protein, at 25,878 to 26,315 _2722 EX28DRAFT_2723: EX28DRAFT_2723 - SsrA-binding protein, at 26,472 to 26,954 _2723 Position (kb) 25 26Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 24.331 kb on + strand, within EX28DRAFT_2719at 24.332 kb on - strand, within EX28DRAFT_2719at 24.482 kb on + strand, within EX28DRAFT_2719at 24.834 kb on - strand, within EX28DRAFT_2719at 25.045 kb on - strandat 25.094 kb on + strandat 25.095 kb on - strandat 25.108 kb on + strandat 25.109 kb on - strandat 25.111 kb on + strandat 25.111 kb on + strandat 25.111 kb on + strandat 25.111 kb on + strandat 25.111 kb on + strandat 25.112 kb on - strandat 25.115 kb on + strandat 25.116 kb on - strandat 25.116 kb on - strandat 25.267 kb on + strand, within EX28DRAFT_2720at 25.268 kb on - strand, within EX28DRAFT_2720at 25.268 kb on - strand, within EX28DRAFT_2720at 25.268 kb on - strand, within EX28DRAFT_2720at 25.268 kb on - strand, within EX28DRAFT_2720at 25.330 kb on - strand, within EX28DRAFT_2720at 25.381 kb on + strand, within EX28DRAFT_2720at 25.381 kb on + strand, within EX28DRAFT_2720at 25.381 kb on + strand, within EX28DRAFT_2720at 25.381 kb on + strand, within EX28DRAFT_2720at 25.382 kb on - strand, within EX28DRAFT_2720at 25.382 kb on - strand, within EX28DRAFT_2720at 25.382 kb on - strand, within EX28DRAFT_2720at 25.382 kb on - strand, within EX28DRAFT_2720at 25.385 kb on + strand, within EX28DRAFT_2720at 25.385 kb on + strand, within EX28DRAFT_2720at 25.386 kb on - strand, within EX28DRAFT_2720at 25.495 kb on + strandat 25.496 kb on - strandat 25.602 kb on + strandat 25.602 kb on + strandat 25.603 kb on - strandat 25.606 kb on + strandat 25.837 kb on - strand, within EX28DRAFT_2721at 25.858 kb on - strand, within EX28DRAFT_2721at 25.863 kb on - strandat 25.863 kb on - strandat 25.868 kb on + strandat 25.868 kb on + strandat 25.891 kb on + strandat 26.350 kb on - strandat 26.356 kb on + strandat 26.356 kb on + strandat 26.357 kb on - strandat 26.394 kb on + strandat 26.399 kb on + strandat 26.472 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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24,331 + EX28DRAFT_2719 0.58 +1.0
24,332 - EX28DRAFT_2719 0.59 +0.2
24,482 + EX28DRAFT_2719 0.68 -0.8
24,834 - EX28DRAFT_2719 0.89 -0.2
25,045 - -0.9
25,094 + +0.0
25,095 - -0.7
25,108 + +0.0
25,109 - +0.2
25,111 + +0.3
25,111 + +0.0
25,111 + -0.7
25,111 + +0.6
25,111 + +0.7
25,112 - -1.2
25,115 + -0.7
25,116 - -1.5
25,116 - -0.1
25,267 + EX28DRAFT_2720 0.32 +0.4
25,268 - EX28DRAFT_2720 0.32 -0.6
25,268 - EX28DRAFT_2720 0.32 -1.0
25,268 - EX28DRAFT_2720 0.32 -1.3
25,268 - EX28DRAFT_2720 0.32 -1.0
25,330 - EX28DRAFT_2720 0.50 -0.8
25,381 + EX28DRAFT_2720 0.65 -1.4
25,381 + EX28DRAFT_2720 0.65 -0.8
25,381 + EX28DRAFT_2720 0.65 -0.3
25,381 + EX28DRAFT_2720 0.65 -0.6
25,382 - EX28DRAFT_2720 0.66 -1.2
25,382 - EX28DRAFT_2720 0.66 -1.0
25,382 - EX28DRAFT_2720 0.66 -3.0
25,382 - EX28DRAFT_2720 0.66 -2.8
25,385 + EX28DRAFT_2720 0.67 -1.5
25,385 + EX28DRAFT_2720 0.67 -1.0
25,386 - EX28DRAFT_2720 0.67 -0.2
25,495 + -0.4
25,496 - -0.2
25,602 + -0.6
25,602 + -0.5
25,603 - -0.3
25,606 + -0.1
25,837 - EX28DRAFT_2721 0.82 -1.3
25,858 - EX28DRAFT_2721 0.89 -1.2
25,863 - -0.4
25,863 - +0.0
25,868 + -0.1
25,868 + -0.3
25,891 + -0.8
26,350 - -0.1
26,356 + +1.8
26,356 + -0.1
26,357 - -1.0
26,394 + +0.2
26,399 + +0.3
26,472 - -3.1

Or see this region's nucleotide sequence