Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2683 and EX28DRAFT_2684 are separated by 52 nucleotides EX28DRAFT_2684 and EX28DRAFT_2685 are separated by 76 nucleotides EX28DRAFT_2685 and EX28DRAFT_2686 are separated by 112 nucleotides
EX28DRAFT_2683: EX28DRAFT_2683 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 2,719,420 to 2,720,784
_2683
EX28DRAFT_2684: EX28DRAFT_2684 - Methyltransferase domain, at 2,720,837 to 2,721,610
_2684
EX28DRAFT_2685: EX28DRAFT_2685 - Uncharacterized protein conserved in bacteria, at 2,721,687 to 2,722,511
_2685
EX28DRAFT_2686: EX28DRAFT_2686 - Arabinose efflux permease, at 2,722,624 to 2,723,799
_2686
Position (kb)
2721
2722
2723 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2721.022 kb on + strand, within EX28DRAFT_2684 at 2721.022 kb on + strand, within EX28DRAFT_2684 at 2721.136 kb on + strand, within EX28DRAFT_2684 at 2721.136 kb on + strand, within EX28DRAFT_2684 at 2721.137 kb on - strand, within EX28DRAFT_2684 at 2721.173 kb on - strand, within EX28DRAFT_2684 at 2721.175 kb on + strand, within EX28DRAFT_2684 at 2721.176 kb on - strand, within EX28DRAFT_2684 at 2721.176 kb on - strand, within EX28DRAFT_2684 at 2721.309 kb on + strand, within EX28DRAFT_2684 at 2721.310 kb on - strand, within EX28DRAFT_2684 at 2721.323 kb on - strand, within EX28DRAFT_2684 at 2721.387 kb on - strand, within EX28DRAFT_2684 at 2721.394 kb on - strand, within EX28DRAFT_2684 at 2721.456 kb on - strand, within EX28DRAFT_2684 at 2721.688 kb on + strand at 2721.688 kb on + strand at 2721.689 kb on - strand at 2721.692 kb on + strand at 2721.692 kb on + strand at 2721.723 kb on + strand at 2721.724 kb on - strand at 2721.788 kb on - strand, within EX28DRAFT_2685 at 2721.824 kb on + strand, within EX28DRAFT_2685 at 2721.930 kb on - strand, within EX28DRAFT_2685 at 2721.976 kb on - strand, within EX28DRAFT_2685 at 2721.989 kb on - strand, within EX28DRAFT_2685 at 2722.213 kb on + strand, within EX28DRAFT_2685 at 2722.213 kb on + strand, within EX28DRAFT_2685 at 2722.337 kb on + strand, within EX28DRAFT_2685 at 2722.404 kb on + strand, within EX28DRAFT_2685 at 2722.404 kb on + strand, within EX28DRAFT_2685 at 2722.459 kb on + strand at 2722.460 kb on - strand at 2722.471 kb on + strand at 2722.471 kb on + strand at 2722.472 kb on - strand at 2722.472 kb on - strand at 2722.472 kb on - strand at 2722.540 kb on - strand at 2722.545 kb on + strand at 2722.546 kb on - strand at 2722.546 kb on - strand at 2722.546 kb on - strand at 2722.546 kb on - strand at 2722.556 kb on + strand at 2722.557 kb on - strand at 2722.563 kb on + strand at 2722.563 kb on + strand at 2722.563 kb on + strand at 2722.564 kb on - strand at 2722.616 kb on + strand at 2722.786 kb on - strand, within EX28DRAFT_2686 at 2722.786 kb on - strand, within EX28DRAFT_2686 at 2722.859 kb on + strand, within EX28DRAFT_2686 at 2722.928 kb on + strand, within EX28DRAFT_2686 at 2722.933 kb on + strand, within EX28DRAFT_2686 at 2722.934 kb on - strand, within EX28DRAFT_2686 at 2723.041 kb on - strand, within EX28DRAFT_2686 at 2723.061 kb on + strand, within EX28DRAFT_2686 at 2723.061 kb on + strand, within EX28DRAFT_2686 at 2723.184 kb on - strand, within EX28DRAFT_2686 at 2723.457 kb on + strand, within EX28DRAFT_2686
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,721,022 + EX28DRAFT_2684 0.24 +0.6 2,721,022 + EX28DRAFT_2684 0.24 -0.4 2,721,136 + EX28DRAFT_2684 0.39 +0.1 2,721,136 + EX28DRAFT_2684 0.39 -0.0 2,721,137 - EX28DRAFT_2684 0.39 +0.3 2,721,173 - EX28DRAFT_2684 0.43 -0.2 2,721,175 + EX28DRAFT_2684 0.44 +0.1 2,721,176 - EX28DRAFT_2684 0.44 +0.0 2,721,176 - EX28DRAFT_2684 0.44 +0.9 2,721,309 + EX28DRAFT_2684 0.61 -0.0 2,721,310 - EX28DRAFT_2684 0.61 +0.7 2,721,323 - EX28DRAFT_2684 0.63 +0.3 2,721,387 - EX28DRAFT_2684 0.71 +0.5 2,721,394 - EX28DRAFT_2684 0.72 -0.2 2,721,456 - EX28DRAFT_2684 0.80 +0.0 2,721,688 + -0.5 2,721,688 + +0.1 2,721,689 - +1.2 2,721,692 + -0.0 2,721,692 + -0.7 2,721,723 + -1.6 2,721,724 - -0.3 2,721,788 - EX28DRAFT_2685 0.12 +0.6 2,721,824 + EX28DRAFT_2685 0.17 -0.5 2,721,930 - EX28DRAFT_2685 0.29 -0.2 2,721,976 - EX28DRAFT_2685 0.35 -0.7 2,721,989 - EX28DRAFT_2685 0.37 -0.5 2,722,213 + EX28DRAFT_2685 0.64 -0.2 2,722,213 + EX28DRAFT_2685 0.64 +1.4 2,722,337 + EX28DRAFT_2685 0.79 -2.4 2,722,404 + EX28DRAFT_2685 0.87 -0.9 2,722,404 + EX28DRAFT_2685 0.87 -0.2 2,722,459 + -0.6 2,722,460 - -0.9 2,722,471 + -1.5 2,722,471 + -0.9 2,722,472 - -0.5 2,722,472 - -0.3 2,722,472 - -0.7 2,722,540 - -0.3 2,722,545 + -0.9 2,722,546 - +0.4 2,722,546 - -0.4 2,722,546 - -0.9 2,722,546 - +0.0 2,722,556 + -0.2 2,722,557 - -0.3 2,722,563 + -0.0 2,722,563 + +0.3 2,722,563 + +0.3 2,722,564 - -0.2 2,722,616 + +0.0 2,722,786 - EX28DRAFT_2686 0.14 +1.5 2,722,786 - EX28DRAFT_2686 0.14 +0.1 2,722,859 + EX28DRAFT_2686 0.20 +0.5 2,722,928 + EX28DRAFT_2686 0.26 -0.0 2,722,933 + EX28DRAFT_2686 0.26 +0.1 2,722,934 - EX28DRAFT_2686 0.26 -0.0 2,723,041 - EX28DRAFT_2686 0.35 +0.5 2,723,061 + EX28DRAFT_2686 0.37 -0.2 2,723,061 + EX28DRAFT_2686 0.37 -2.9 2,723,184 - EX28DRAFT_2686 0.48 +0.3 2,723,457 + EX28DRAFT_2686 0.71 +0.3
Or see this region's nucleotide sequence