Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2625 and EX28DRAFT_2626 are separated by 13 nucleotides EX28DRAFT_2626 and EX28DRAFT_2627 are separated by 17 nucleotides EX28DRAFT_2627 and EX28DRAFT_2628 overlap by 4 nucleotides
EX28DRAFT_2625: EX28DRAFT_2625 - Peptidase family U32, at 2,664,440 to 2,665,378
_2625
EX28DRAFT_2626: EX28DRAFT_2626 - hypothetical protein, at 2,665,392 to 2,666,168
_2626
EX28DRAFT_2627: EX28DRAFT_2627 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 2,666,186 to 2,667,157
_2627
EX28DRAFT_2628: EX28DRAFT_2628 - Aspartate/tyrosine/aromatic aminotransferase, at 2,667,154 to 2,668,305
_2628
Position (kb)
2666
2667
2668 Strain fitness (log2 ratio)
-1
0
1
2 at 2665.202 kb on + strand, within EX28DRAFT_2625 at 2665.327 kb on - strand at 2665.376 kb on + strand at 2665.377 kb on - strand at 2665.377 kb on - strand at 2665.377 kb on - strand at 2665.399 kb on + strand at 2665.400 kb on - strand at 2665.400 kb on - strand at 2665.464 kb on + strand at 2665.464 kb on + strand at 2665.503 kb on + strand, within EX28DRAFT_2626 at 2665.503 kb on + strand, within EX28DRAFT_2626 at 2665.688 kb on + strand, within EX28DRAFT_2626 at 2665.699 kb on - strand, within EX28DRAFT_2626 at 2665.931 kb on - strand, within EX28DRAFT_2626 at 2665.988 kb on - strand, within EX28DRAFT_2626 at 2666.260 kb on + strand at 2666.839 kb on + strand, within EX28DRAFT_2627 at 2666.859 kb on + strand, within EX28DRAFT_2627 at 2666.866 kb on + strand, within EX28DRAFT_2627 at 2666.953 kb on - strand, within EX28DRAFT_2627 at 2667.100 kb on + strand at 2667.100 kb on + strand at 2667.101 kb on - strand at 2667.101 kb on - strand at 2667.121 kb on + strand at 2667.135 kb on + strand at 2667.135 kb on + strand at 2667.139 kb on - strand at 2667.180 kb on + strand at 2667.248 kb on + strand at 2667.249 kb on - strand at 2667.276 kb on + strand, within EX28DRAFT_2628 at 2667.276 kb on + strand, within EX28DRAFT_2628 at 2667.276 kb on + strand, within EX28DRAFT_2628 at 2667.277 kb on - strand, within EX28DRAFT_2628 at 2667.309 kb on - strand, within EX28DRAFT_2628 at 2667.343 kb on - strand, within EX28DRAFT_2628 at 2667.391 kb on + strand, within EX28DRAFT_2628 at 2667.391 kb on + strand, within EX28DRAFT_2628 at 2667.392 kb on - strand, within EX28DRAFT_2628 at 2667.432 kb on + strand, within EX28DRAFT_2628 at 2667.548 kb on + strand, within EX28DRAFT_2628 at 2667.554 kb on + strand, within EX28DRAFT_2628 at 2667.554 kb on + strand, within EX28DRAFT_2628 at 2667.598 kb on + strand, within EX28DRAFT_2628 at 2667.598 kb on + strand, within EX28DRAFT_2628 at 2667.688 kb on + strand, within EX28DRAFT_2628 at 2667.689 kb on - strand, within EX28DRAFT_2628 at 2667.689 kb on - strand, within EX28DRAFT_2628 at 2667.689 kb on - strand, within EX28DRAFT_2628 at 2667.689 kb on - strand, within EX28DRAFT_2628 at 2667.689 kb on - strand, within EX28DRAFT_2628 at 2667.721 kb on + strand, within EX28DRAFT_2628 at 2667.722 kb on - strand, within EX28DRAFT_2628 at 2667.738 kb on + strand, within EX28DRAFT_2628 at 2667.808 kb on + strand, within EX28DRAFT_2628 at 2667.834 kb on + strand, within EX28DRAFT_2628 at 2667.848 kb on - strand, within EX28DRAFT_2628 at 2667.982 kb on - strand, within EX28DRAFT_2628 at 2668.106 kb on - strand, within EX28DRAFT_2628
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,665,202 + EX28DRAFT_2625 0.81 +0.2 2,665,327 - +1.1 2,665,376 + +1.8 2,665,377 - +0.2 2,665,377 - +0.3 2,665,377 - +0.7 2,665,399 + +0.1 2,665,400 - +0.3 2,665,400 - +0.3 2,665,464 + -0.6 2,665,464 + +0.1 2,665,503 + EX28DRAFT_2626 0.14 +0.3 2,665,503 + EX28DRAFT_2626 0.14 +0.5 2,665,688 + EX28DRAFT_2626 0.38 +0.4 2,665,699 - EX28DRAFT_2626 0.40 +0.8 2,665,931 - EX28DRAFT_2626 0.69 +0.1 2,665,988 - EX28DRAFT_2626 0.77 +0.3 2,666,260 + +1.1 2,666,839 + EX28DRAFT_2627 0.67 +0.1 2,666,859 + EX28DRAFT_2627 0.69 -0.1 2,666,866 + EX28DRAFT_2627 0.70 +0.0 2,666,953 - EX28DRAFT_2627 0.79 +2.5 2,667,100 + +0.5 2,667,100 + -0.6 2,667,101 - -0.3 2,667,101 - +0.2 2,667,121 + -0.7 2,667,135 + +0.0 2,667,135 + +0.2 2,667,139 - -0.3 2,667,180 + +0.6 2,667,248 + +1.1 2,667,249 - +0.5 2,667,276 + EX28DRAFT_2628 0.11 +0.7 2,667,276 + EX28DRAFT_2628 0.11 +0.0 2,667,276 + EX28DRAFT_2628 0.11 +0.3 2,667,277 - EX28DRAFT_2628 0.11 +1.0 2,667,309 - EX28DRAFT_2628 0.13 +1.0 2,667,343 - EX28DRAFT_2628 0.16 +0.7 2,667,391 + EX28DRAFT_2628 0.21 +0.7 2,667,391 + EX28DRAFT_2628 0.21 -0.3 2,667,392 - EX28DRAFT_2628 0.21 +1.2 2,667,432 + EX28DRAFT_2628 0.24 -1.3 2,667,548 + EX28DRAFT_2628 0.34 -0.1 2,667,554 + EX28DRAFT_2628 0.35 +0.8 2,667,554 + EX28DRAFT_2628 0.35 +0.6 2,667,598 + EX28DRAFT_2628 0.39 -0.1 2,667,598 + EX28DRAFT_2628 0.39 +0.7 2,667,688 + EX28DRAFT_2628 0.46 +0.1 2,667,689 - EX28DRAFT_2628 0.46 +0.4 2,667,689 - EX28DRAFT_2628 0.46 +1.1 2,667,689 - EX28DRAFT_2628 0.46 +0.3 2,667,689 - EX28DRAFT_2628 0.46 +0.7 2,667,689 - EX28DRAFT_2628 0.46 -0.1 2,667,721 + EX28DRAFT_2628 0.49 +0.0 2,667,722 - EX28DRAFT_2628 0.49 +0.4 2,667,738 + EX28DRAFT_2628 0.51 +0.6 2,667,808 + EX28DRAFT_2628 0.57 +0.9 2,667,834 + EX28DRAFT_2628 0.59 +0.3 2,667,848 - EX28DRAFT_2628 0.60 +0.7 2,667,982 - EX28DRAFT_2628 0.72 +0.4 2,668,106 - EX28DRAFT_2628 0.83 +0.0
Or see this region's nucleotide sequence